Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0295 ATGACACAGATTTCATGGCATGCACTGCCCAAAAATTTTTCCGATAATTTAAGAAAGAATTTGCCAGATTATGTGACTCTCAAAGGTCCTGGTCGCGATGAGTGGAGTGTTGGACTGACAACCAGAAATGATACCCTGCACTTCACGCATGGCTGGCAACAATTTGTAAAAGATCATTGCTTGGAAGAGAATGATCTGCTGGTCTTCAAGTACAATAATGAATCGCAGTTTGATGTTCTGATATTTGGCCGAGGGAGCTTCTGTGAGAAGGCTGATGCTTATTTTGTAAGGAAATGTGGGCATACAAAAAAGAGAATCAGAGATAACCATCCGGAAGAAGTCAATTTCCCTTCTAATATTCGCTCTGGACATGCTTCACCGGAGAAGTTTGTGCATGGTGAGAGTATTGGGGTACCGGCAGTTGTCCCCTCTGAAATTAGTAGCGAAGAGGCCTTTGATGCTGGTGTGGAATTTGCCTCCCCTGTGACAGCAATTCCAATGGTTGGAACGGAAGTCCAAACTAAGCAGAGAGGAGGACCCAGAGGATCTAAAGCCCGTGGAGGCAGAGCTAACTTGATATCTGATGCTGAACCTTCATCTGCGGGCAGAAATAAGACGAATGAAATACTATATATTTCAAGCAGAAGGCCCGTCACTGAAGATGAGAAAACGAGTGCCCTCCAATTGGCTCAGGCAGCTTGTACTGACCATGGTTTCTACATAATCATGCGTCCCACACATGTATACAAGAGATTCTATGCGTCAATCCCGAGCAAGTGGTTAGCGGAACATCTATCTCCTCACTCAGAAGATGTAATATTGCGCTCGGGAGGCAATGAATGGCTTGCCAAATACAGCTATGAACATGGCCGTCGAACTGGTGGTCTGACTGGTGGGTGGAAACAGTTCGCTTTGGACAATAACCTTGAAGAATTTGATGTTTGTGTGTTTGAACTAGTTGGTCAAAAGAAGCCATTGATCATGGATGTGACAGTATTCAGAGTTGTTGAGGAGTGCTCTCCTCTGGATAAAGTGGAGTCTGGAGGAAAACGAGGCCGAAATGGCATCCAGTCATAG 1077 0.4503 MTQISWHALPKNFSDNLRKNLPDYVTLKGPGRDEWSVGLTTRNDTLHFTHGWQQFVKDHCLEENDLLVFKYNNESQFDVLIFGRGSFCEKADAYFVRKCGHTKKRIRDNHPEEVNFPSNIRSGHASPEKFVHGESIGVPAVVPSEISSEEAFDAGVEFASPVTAIPMVGTEVQTKQRGGPRGSKARGGRANLISDAEPSSAGRNKTNEILYISSRRPVTEDEKTSALQLAQAACTDHGFYIIMRPTHVYKRFYASIPSKWLAEHLSPHSEDVILRSGGNEWLAKYSYEHGRRTGGLTGGWKQFALDNNLEEFDVCVFELVGQKKPLIMDVTVFRVVEECSPLDKVESGGKRGRNGIQS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0295 358 CDD B3_DNA 9 82 IPR003340 GO:0003677
Prci2g0295 358 Gene3D - 3 88 IPR015300 -
Prci2g0295 358 SMART B3_2 239 336 IPR003340 GO:0003677
Prci2g0295 358 SMART B3_2 2 85 IPR003340 GO:0003677
Prci2g0295 358 Gene3D - 217 338 IPR015300 -
Prci2g0295 358 MobiDBLite consensus disorder prediction 173 202 - -
Prci2g0295 358 CDD B3_DNA 239 334 IPR003340 GO:0003677
Prci2g0295 358 ProSiteProfiles B3 DNA-binding domain profile. 239 336 IPR003340 GO:0003677
Prci2g0295 358 Pfam B3 DNA binding domain 8 82 IPR003340 GO:0003677
Prci2g0295 358 Pfam B3 DNA binding domain 239 330 IPR003340 GO:0003677
Prci2g0295 358 SUPERFAMILY DNA-binding pseudobarrel domain 239 326 IPR015300 -
Prci2g0295 358 SUPERFAMILY DNA-binding pseudobarrel domain 5 84 IPR015300 -
Prci2g0295 358 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 338 IPR044837 -
Prci2g0295 358 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0295 Prci-Chr2 2083646 2086678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0295 8 334 REM Transcription Factor Family AT4G33280 31.492 9.29e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci2g0295 B3 1.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0295 - - pcin:129301699 724.546