Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0294 ATGGGGGAAAATTGTCAAAGCTGTAGATCATGGGTGGACGACATTTACTGGACCCGTTTCCAATTCGTCCATTTTGCCCTCTTTCTTCCCAAAGGCTTTGATCTACAACTTGCACTGCCCAAAAATTTTTCCGATAATTTAAGAAAGAATTTGCCAGATTATGTGACTCTCAAAGGTCCTGGTCGCGATGAGTGGAGTGTTGGACTGACAACCAGAAATGATACCCTGCACTTCACGCATGGCTGGCAACAATTTGTAAAAGATCATTGCTTGGAAGAGAATGATCTGCTGGTCTTCAAGTACAATAATGAATCGCAGTTTGATGTTCTGATATTTGGCCGAGGGAGCTTCTGTGAGAAGGCTGATGCTTATTTTGTAAGGAAATGTGGGCATACAAAAAAGAGAATCAGAGATAACCATCCGGAAGAAGTCAATTTCCCTTCTAATATTCGCTCTGGACATGCTTCACCGGAGAAGTTTGTGCATGGTGAGAGTATTGGGGTACCGGCAGTTGTCCCCTCTGAAATTAGTAGCGAAGAGGCCTTTGATGCTGGTGTGGAATTTGCCTCCCCTGTGACAGCAATTCCAATGGTTGGAACGGAAGTCCAAACTAAGCAGAGAGGAGGACCCAGAGGATCTAAAGCCCGTGGAGGCAGAGCTAACTTGATATCTGATGCTGAACCTTCATCTGCGGGCAGAAATAAGACGAATGAAATACTATATATTTCAAGCAGAAGGCCCGTCACTGAAGATGAGAAAACGAGTGCCCTCCAATTGGCTCAGGCAGCTTGTACTGACCATGGTTTCTACATAATCATGCGTCCCACACATGTATACAAGAGATTCTATGCGTCAATCCCGAGCAAGTGGTTAGCGGAACATCTATCTCCTCACTCAGAAGATGTAATATTGCGCTCGGGAGGCAATGAATGGCTTGCCAAATACAGCTATGAACATGGCCGTCGAACTGGTGGTCTGACTGGTGGGTGGAAACAGTTCGCTTTGGACAATAACCTTGAAGAATTTGATGTTTGTGTGTTTGAACTAGTTGGTCAAAAGAAGCCATTGATCATGGATGTGACAGTATTCAGAGTTGTTGAGGAGTGCTCTCCTCTGGATAAAGTGGAGTCTGGAGGAAAACGAGGCCGAAATGGCATCCAGTCATAG 1167 0.4507 MGENCQSCRSWVDDIYWTRFQFVHFALFLPKGFDLQLALPKNFSDNLRKNLPDYVTLKGPGRDEWSVGLTTRNDTLHFTHGWQQFVKDHCLEENDLLVFKYNNESQFDVLIFGRGSFCEKADAYFVRKCGHTKKRIRDNHPEEVNFPSNIRSGHASPEKFVHGESIGVPAVVPSEISSEEAFDAGVEFASPVTAIPMVGTEVQTKQRGGPRGSKARGGRANLISDAEPSSAGRNKTNEILYISSRRPVTEDEKTSALQLAQAACTDHGFYIIMRPTHVYKRFYASIPSKWLAEHLSPHSEDVILRSGGNEWLAKYSYEHGRRTGGLTGGWKQFALDNNLEEFDVCVFELVGQKKPLIMDVTVFRVVEECSPLDKVESGGKRGRNGIQS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0294 388 SMART B3_2 25 115 IPR003340 GO:0003677
Prci2g0294 388 SMART B3_2 269 366 IPR003340 GO:0003677
Prci2g0294 388 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Prci2g0294 388 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Prci2g0294 388 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 368 IPR044837 -
Prci2g0294 388 CDD B3_DNA 269 364 IPR003340 GO:0003677
Prci2g0294 388 MobiDBLite consensus disorder prediction 203 232 - -
Prci2g0294 388 SUPERFAMILY DNA-binding pseudobarrel domain 269 356 IPR015300 -
Prci2g0294 388 ProSiteProfiles B3 DNA-binding domain profile. 269 366 IPR003340 GO:0003677
Prci2g0294 388 Gene3D - 19 118 IPR015300 -
Prci2g0294 388 CDD B3_DNA 36 112 IPR003340 GO:0003677
Prci2g0294 388 Gene3D - 247 368 IPR015300 -
Prci2g0294 388 Pfam B3 DNA binding domain 36 112 IPR003340 GO:0003677
Prci2g0294 388 Pfam B3 DNA binding domain 269 359 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0294 Prci-Chr2 2083646 2086922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0294 1 364 REM Transcription Factor Family AT4G33280 32.832 8.23e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci2g0294 B3 2.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0294 - - pcin:129301699 806.594