Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0274 ATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAAATTTCGGAAGGGCGTTATAATGCAAATTATAGAGAGGATACAGATTATTACTTACCATCAACTTCAGGGGATGTCTGGTCAGAGAATGAGAATGAAAATATAGATCGTGCTATTGCACTATCTCTGGTAGAGGAAAATCAGCGAAGGAAGAACATAAATGACCGCAAGTCACAATTAGAAGAAGATGAACAACTTGCTAGAGCTATACAAGAAAGTCTAAATGTTGAGTCTCCTCCCAGATATGGAAACGGAAATATGTATCAACCGATGCCGGTGTATTTCCCCATAGGGTCCAGGATTTGTGCTGGTTGTAATACTGAGATTGGTTATGGACGGTATCTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTCCCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTATCATAAATCATGCTATAGAGAAAACTATCATCCAAAATGTGATGTCTGCAAGCATTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTCTGGATCCAGAAGTATTGCCCTTCTCACGAACATGATGGTACTCCACGCTGTTGCAGCTGCGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGAAAGCTGTGCCTGGAATGTCTGGACTCTGCTATCATGGATACTAGCGAATGCCAACCCCTTTATAGTGACATACAAAAATTTTATGAAAGTCTTCATATGAGACTGGAACAGCAAGTTCCATTGCTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGGGAGAAGAATGGCCACTATCACATGCCTGAGACCCGGGGACTCTGCCTTTCCGAAGAGCAGACTATCAGCACTGTCTTGAGGCGACCTCGGTTTGGAGCAGGCAATAGAGCAGTAGACATGAGAACACAACCCTACAAACTTACTCGACGCTGTGATGTGACAGCAATTCTCATCTTGTATGGCCTTCCCAGGTTGCTCACTGGATCAATCCTAGCTCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTTGTGGCGCATATGTGGTTGGAGTCTGA 1146 0.438 MGWLSKIFKGSDHKISEGRYNANYREDTDYYLPSTSGDVWSENENENIDRAIALSLVEENQRRKNINDRKSQLEEDEQLARAIQESLNVESPPRYGNGNMYQPMPVYFPIGSRICAGCNTEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYRENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYESLHMRLEQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISTVLRRPRFGAGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGCGAYVVGV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0274 381 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Prci2g0274 381 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Prci2g0274 381 SMART lim_4 114 166 IPR001781 -
Prci2g0274 381 SMART uim 74 93 IPR003903 -
Prci2g0274 381 SMART uim 43 62 IPR003903 -
Prci2g0274 381 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Prci2g0274 381 PANTHER PROTEIN DA1-RELATED 2 3 374 IPR045218 -
Prci2g0274 381 Pfam LIM domain 115 169 IPR001781 -
Prci2g0274 381 Coils Coil 56 76 - -
Prci2g0274 381 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Prci2g0274 381 Gene3D Cysteine Rich Protein 110 189 - -
Prci2g0274 381 Pfam Protein DA1 265 374 IPR022087 -
Prci2g0274 381 CDD LIM_DA1 115 167 - -
Prci2g0274 381 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Prci2g0274 381 FunFam Protein DA1-related 1 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0274 Prci-Chr2 1940421 1946910 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci2g0274 DA1-like 1.8e-55 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0274 - - qsa:O6P43_016130 712.22