Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0169 ATGCAATCCATTGACGGGCATCCCAACACTGCCACAGGCGATTCATCTGTCAACGCTTTCACAAGGACGTCATTGGGGCTCGTTGACAGTGAACAGAACATACAGAGCCAGGGCTTATCTCTTAGCCTTGGCACACTCATGCCCGTCCCTCCCTTCCAATACCACTATCCCTCCTCCGGCTTTTCGTCGCTGATGATTCCAAATCTCCCAAACGTTAAAGGCACTGTTTCTTTTAAAGACGATGAGGCAGGTGCTGAATGCATGGCACCTGTATCTTCTGGAGGCTTTGACAACTCCATCCAAAAGGAGGCTCTGTACAATCCACACTCCTCACTCTACCACAAGGAAGCCCCCCATGATCCGTCGTGTCTGCATGGTTCACAAGGTTTTCCAAACGCTGCCTTAAACTCCCAATACCTTAAAGCAGCTCAGGAATTGCTTGATGAAATAGTCAGTGTCAGGAAGGCTTTAAAGCAGCCTGGACTGGAGAAGCAAAAAGGTTCCCTTGACATCGCATTAGATGGCTCCAAAGAGTCCGAGGAAAAGTCTCCCAGTCAGTCTATGCTGATGCATCCGGACCCTAATGCTTCATCTGCCAATGCGTCATGCGAATTGTCACCCGCAGAACGGCAGAGTTTGCTGGATAAGAAGGCTAAGCTTTTGTCCATGTTAGATGAGGTAGATAAAAGATACCGGCAGTACTGCCATCAGATGCAAATGGTGGTGTCATCTTTTGATATGGTTGCTGGTTGTGGGGCGGCTGAACCATATACTGCACTTGCTTTACGAACAATTTCTCGTCATTTTCGCTGTTTGCGTGATGCTATTAGCGGCCAAATTCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGGATACCTCGTCTCCGCTATGTTGATCAGCAGCTACGGCAGCAAAAAGCCCTTCAGCAGCTTGGCGTGATGAGACAAGCTTGGAGGCCGCAGAGGGGACTTCCTGAAAGCTCTGTTTCCATACTCCGCGCTTGGCTTTTTGAGCATTTCCTTCATCCTTACCCAAAGGACTCCGAGAAAATTATGCTGGCAAGGCAAACAGGCTTGACCAGGAACCAGGTGGCGAACTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAACCAATGGTTGAAGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGACAAGCTGCAATCTCTCATCTGAAAGTACTCCCCAGGCTCCAAGAGATAATAAAGGGGAAGAGTCGCAGGACAATGTAAAAGCTGCCAATAATGTGCAACGGGGGCAGCTTCATGAGTTTAAGTTAGACCATGGCTCCGCTACAGGATTTGACAATGCCCATGGAGGAGCTATCATGCATTCTGGAATTATGAAACTGCAGCAGGGTGATCAAAGGCCTAACATGAACAATACCCTTTACTCGACCGGACCTATGCCAGCCAACCACAATGGTGATGGTTGCCTAATGCCTTCTGCTCCGGCCTCATACGATTTTTCAGAGTTGGGTAGTTTTCCGGTGGGTGGCCATGTGTCTCTTGCTTTAGAGTTGCGCAACTGTGAAACTGAGGAATTCTCCGGTTCTGATAATCGTTTCAACAAACAACGTCATCAGACATTAGATTCTTCCCCAGAAGATAATTTGATTGATTATCATTTCACGGATTCGGGAAAGCAACAAAACAGGTTTAGTAATCCACATCTATTGCATGAGTTTGTCGTCTAA 1725 0.4754 MQSIDGHPNTATGDSSVNAFTRTSLGLVDSEQNIQSQGLSLSLGTLMPVPPFQYHYPSSGFSSLMIPNLPNVKGTVSFKDDEAGAECMAPVSSGGFDNSIQKEALYNPHSSLYHKEAPHDPSCLHGSQGFPNAALNSQYLKAAQELLDEIVSVRKALKQPGLEKQKGSLDIALDGSKESEEKSPSQSMLMHPDPNASSANASCELSPAERQSLLDKKAKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMTSCNLSSESTPQAPRDNKGEESQDNVKAANNVQRGQLHEFKLDHGSATGFDNAHGGAIMHSGIMKLQQGDQRPNMNNTLYSTGPMPANHNGDGCLMPSAPASYDFSELGSFPVGGHVSLALELRNCETEEFSGSDNRFNKQRHQTLDSSPEDNLIDYHFTDSGKQQNRFSNPHLLHEFVV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0169 574 SMART HOX_1 319 383 IPR001356 GO:0003677
Prci2g0169 574 MobiDBLite consensus disorder prediction 168 205 - -
Prci2g0169 574 Pfam Associated with HOX 135 277 IPR006563 -
Prci2g0169 574 CDD homeodomain 319 380 IPR001356 GO:0003677
Prci2g0169 574 SUPERFAMILY Homeodomain-like 320 387 IPR009057 -
Prci2g0169 574 MobiDBLite consensus disorder prediction 393 407 - -
Prci2g0169 574 FunFam BEL1-like homeodomain protein 4 322 384 - -
Prci2g0169 574 SMART prehox3 128 278 IPR006563 -
Prci2g0169 574 MobiDBLite consensus disorder prediction 392 420 - -
Prci2g0169 574 ProSiteProfiles 'Homeobox' domain profile. 316 379 IPR001356 GO:0003677
Prci2g0169 574 Pfam Homeobox KN domain 336 375 IPR008422 GO:0003677|GO:0006355
Prci2g0169 574 Gene3D - 316 393 - -
Prci2g0169 574 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 106 407 - -
Prci2g0169 574 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0169 Prci-Chr2 1382209 1386894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0169 8 391 Homeobox Transcription Factor Family AT1G19700 52.152 1.57e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci2g0169 POX 3.9e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0169 - - gmx:100775682 714.531