Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0168 ATGATGTACTCGAACCAAGCTTTTTCTTCTGGGTCCTACGCGGAGATGTTGTCTGGCAATTCTTTTTTACCTCATAACTTCACTGAAACTGTAGGAGGCCAAAACGAGGTGAAGTTCATCACAGCCATAGGTGACACTGTGGCCATGCAATCCATTGACGGGCATCCCAACACTGCCACAGGCGATTCATCTGTCAACGCTTTCACAAGGACGTCATTGGGGCTCGTTGACAGTGAACAGAACATACAGAGCCAGGGCTTATCTCTTAGCCTTGGCACACTCATGCCCGTCCCTCCCTTCCAATACCACTATCCCTCCTCCGGCTTTTCGTCGCTGATGATTCCAAATCTCCCAAACGTTAAAGGCACTGTTTCTTTTAAAGACGATGAGGCAGGTGCTGAATGCATGGCACCTGTATCTTCTGGAGGCTTTGACAACTCCATCCAAAAGGAGGCTCTGTACAATCCACACTCCTCACTCTACCACAAGGAAGCCCCCCATGATCCGTCGTGTCTGCATGGTTCACAAGGTTTTCCAAACGCTGCCTTAAACTCCCAATACCTTAAAGCAGCTCAGGAATTGCTTGATGAAATAGTCAGTGTCAGGAAGGCTTTAAAGCAGCCTGGACTGGAGAAGCAAAAAGGTTCCCTTGACATCGCATTAGATGGCTCCAAAGAGTCCGAGGAAAAGTCTCCCAGTCAGTCTATGCTGATGCATCCGGACCCTAATGCTTCATCTGCCAATGCGTCATGCGAATTGTCACCCGCAGAACGGCAGAGTTTGCTGGATAAGAAGGCTAAGCTTTTGTCCATGTTAGATGAGGTAGATAAAAGATACCGGCAGTACTGCCATCAGATGCAAATGGTGGTGTCATCTTTTGATATGGTTGCTGGTTGTGGGGCGGCTGAACCATATACTGCACTTGCTTTACGAACAATTTCTCGTCATTTTCGCTGTTTGCGTGATGCTATTAGCGGCCAAATTCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGGATACCTCGTCTCCGCTATGTTGATCAGCAGCTACGGCAGCAAAAAGCCCTTCAGCAGCTTGGCGTGATGAGACAAGCTTGGAGGCCGCAGAGGGGACTTCCTGAAAGCTCTGTTTCCATACTCCGCGCTTGGCTTTTTGAGCATTTCCTTCATCCTTACCCAAAGGACTCCGAGAAAATTATGCTGGCAAGGCAAACAGGCTTGACCAGGAACCAGGTGGCGAACTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAACCAATGGTTGAAGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGACAAGCTGCAATCTCTCATCTGAAAGTACTCCCCAGGCTCCAAGAGATAATAAAGGGGAAGAGTCGCAGGACAATGTAAAAGCTGCCAATAATGTGCAACGGGGGCAGCTTCATGAGTTTAAGTTAGACCATGGCTCCGCTACAGGATTTGACAATGCCCATGGAGGAGCTATCATGCATTCTGGAATTATGAAACTGCAGCAGGGTGATCAAAGGCCTAACATGAACAATACCCTTTACTCGACCGGACCTATGCCAGCCAACCACAATGGTGATGGTTGCCTAATGCCTTCTGCTCCGGCCTCATACGATTTTTCAGAGTTGGGTAGTTTTCCGGTGGGTGGCCATGTGTCTCTTGCTTTAGAGTTGCGCAACTGTGAAACTGAGGAATTCTCCGGTTCTGATAATCGTTTCAACAAACAACGTCATCAGACATTAGATTCTTCCCCAGAAGATAATTTGATTGATTATCATTTCACGGATTCGGGAAAGCAACAAAACAGGTTTAGTAATCCACATCTATTGCATGAGTTTGTCGTCTAA 1869 0.4741 MMYSNQAFSSGSYAEMLSGNSFLPHNFTETVGGQNEVKFITAIGDTVAMQSIDGHPNTATGDSSVNAFTRTSLGLVDSEQNIQSQGLSLSLGTLMPVPPFQYHYPSSGFSSLMIPNLPNVKGTVSFKDDEAGAECMAPVSSGGFDNSIQKEALYNPHSSLYHKEAPHDPSCLHGSQGFPNAALNSQYLKAAQELLDEIVSVRKALKQPGLEKQKGSLDIALDGSKESEEKSPSQSMLMHPDPNASSANASCELSPAERQSLLDKKAKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMTSCNLSSESTPQAPRDNKGEESQDNVKAANNVQRGQLHEFKLDHGSATGFDNAHGGAIMHSGIMKLQQGDQRPNMNNTLYSTGPMPANHNGDGCLMPSAPASYDFSELGSFPVGGHVSLALELRNCETEEFSGSDNRFNKQRHQTLDSSPEDNLIDYHFTDSGKQQNRFSNPHLLHEFVV 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0168 622 MobiDBLite consensus disorder prediction 216 253 - -
Prci2g0168 622 CDD homeodomain 367 428 IPR001356 GO:0003677
Prci2g0168 622 SMART HOX_1 367 431 IPR001356 GO:0003677
Prci2g0168 622 Gene3D - 364 441 - -
Prci2g0168 622 SMART prehox3 176 326 IPR006563 -
Prci2g0168 622 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Prci2g0168 622 Pfam Associated with HOX 183 325 IPR006563 -
Prci2g0168 622 MobiDBLite consensus disorder prediction 440 468 - -
Prci2g0168 622 SUPERFAMILY Homeodomain-like 368 435 IPR009057 -
Prci2g0168 622 MobiDBLite consensus disorder prediction 441 455 - -
Prci2g0168 622 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Prci2g0168 622 MobiDBLite consensus disorder prediction 230 253 - -
Prci2g0168 622 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 142 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0168 Prci-Chr2 1382208 1386894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0168 39 450 Homeobox Transcription Factor Family AT1G19700 50.708 6.98e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci2g0168 POX 4.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0168 - - gmx:100775682 783.867