Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci2g0152 | ATGGCTGGGTTCTTCTCTCTAGGCCCACAGAACAAACAAGAAGAAGAAAAAGAAGATAACAACAACAGTAACAGCCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAAGGATTCGAGATATGGCCGCAGTCTTATCATCAGCCGCATCACAACTTGAACAACTACTACTCGTTCGGGGCGGGTCCTAGTCGCAGAAACTCCTCAAACGACGACGTCGTCTCTGACGACTCTACGAGGTTCGGATTCACGGTCATGAGGTCTGGAGGTCTAGGAGGTGGCATGAACTGTCAAGATTGCGGGAACCAGGCTAAGAAGGACTGTGCACATCTCAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCACACCCACGTCAAGAGCACTTGGGTTCCCGCAGCTAAACGCCGTGAACGACAGCAACAACTCGCTGCGTTGCAGCAGCAGCAGCAGCAAGACCAACAATTTAGAGGAGATAATTCGAAACGACACAGAGAAAATCAAGCTTCCGGCTCTCTTGCCTGCGCTCCATTAATGCCAATTGCCACAACAGGGTTGGAACTGGGACAATTCCCACAGGAGGTGAACTCTTCGGCTGTGTTTCGCTGCGTGAGAGTAAGCGCAATGGACAGTCCAGAGGACCAGTACGCGTATCAAACGGCTGTGAACATCGGAGGTCACCTTTTCAAGGGAATTCTGTATGACCAAGGCCCTGAAGGTGCTTACACCACCGGTGGCGAGAGCTCCTCCGGTGGAGCTGAAGCTCAACAATTAAATCTCATAACCGCGTCGACCCCCACGAATGCGGCAACAACCAGCAGCGCTAACCCATTTGATCCATCTTCACTATACCCGGCTCCGCTCAATGCCTTCATGGCTGGTACGCAATTCTTCCCACCCCCGAGGTCCTAA | 918 | 0.5185 | MAGFFSLGPQNKQEEEKEDNNNSNSLFLFRNEEIYNKGFEIWPQSYHQPHHNLNNYYSFGAGPSRRNSSNDDVVSDDSTRFGFTVMRSGGLGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCHTHVKSTWVPAAKRRERQQQLAALQQQQQQDQQFRGDNSKRHRENQASGSLACAPLMPIATTGLELGQFPQEVNSSAVFRCVRVSAMDSPEDQYAYQTAVNIGGHLFKGILYDQGPEGAYTTGGESSSGGAEAQQLNLITASTPTNAATTSSANPFDPSSLYPAPLNAFMAGTQFFPPPRS | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci2g0152 | 305 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 291 | IPR007818 | GO:0003700|GO:0006355 | |
Prci2g0152 | 305 | Pfam | Domain of unknown function (DUF702) | 94 | 241 | - | - | |
Prci2g0152 | 305 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Prci2g0152 | 305 | NCBIfam | LRP1 C-terminal domain | 192 | 240 | IPR006511 | - | |
Prci2g0152 | 305 | MobiDBLite | consensus disorder prediction | 149 | 172 | - | - | |
Prci2g0152 | 305 | NCBIfam | putative zinc finger domain, LRP1 type | 96 | 138 | IPR006510 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci2g0152 | Prci-Chr2 | 1234690 | 1237556 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci2g0152 | 1 | 305 | C2H2 Transcription Factor Family | AT1G75520 | 47.887 | 2.25e-87 | 263 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SRS | Prci2g0152 | DUF702 | 2.7e-66 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci2g0152 | - | - | gmx:100807290 | 404.06 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Prci2g0152 | 2 | 1234690 | 1237556 | Prci8g0412 | 8 | 2595868 | 2598222 | CCT |