Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0145 ATGAAGATCCTCTGCGACGTCTGTAATAACCACGAGGCTTCCCTATTCTGCACCGCCGACGAGGCCGCCCTCTGTGATGCCTGCGACCAGCGCGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTTTCTCTTCACCGCCCTTCTCCCAACCATTTCCCTCTTTGTGATATTTGCCAGGAGCGAAGAGCTTTCGTGTTCTGTCAACAGGACAGAGCAATTCTGTGCAAAGATTGTGATGTGCCAATTCACTCGGCCAACGAGCACACCCAGAAGCATAATAGGTTTCTTCTAACGGGGATTAAGCTCTCTGCTGCTTCTACGCTTTATTCACCATCAACTACCAATTCCGTCTTGACGAATGGTTCTGATTCTGTGTCTAATTCCAAGACGCAGAATATAGCTAAGAACTCTGTTTCTGCTTCTTCTGCCATCTCACATCCCTCTTCAATGGACAAGGCTTCACCTTCAACAGCATCAACATATGCCACGCCCACGATTAATAAGGCTGGGGGAAACTTGTTAACGAACGAAGGGATTGTTTCCTCAAGTAGCATATCTGAGTATTTGATAGAGACTCTCCCAGGCTGGCAGGTCGACGACTTTCTCGATTCTTCTTCCGTTCCGTTTGGCTTCAGTAAGAGTGATGATATGTTGGCCGTGTTCAACGCTGATGTTGAGAGAAATATGTGTTCTTTCTCGCCCGAGAGTATGGGGATCTGGGTTCCTCAAGCACCCACTACTCTGTTTACCCAACAAGTGGATCGGCAGATCAAGTTCCAAGAGAGAAAAGAGGCGACCAATATTGAGGCCAGCAGATCAAGGTCGAGGGATGATAATTTCATAGTTCCACAAATTAACCCTCCTACTGGGTCAAAGAGATCCAGACTTCTTTGGTAG 906 0.4801 MKILCDVCNNHEASLFCTADEAALCDACDQRVHHANKLASKHQRFSLHRPSPNHFPLCDICQERRAFVFCQQDRAILCKDCDVPIHSANEHTQKHNRFLLTGIKLSAASTLYSPSTTNSVLTNGSDSVSNSKTQNIAKNSVSASSAISHPSSMDKASPSTASTYATPTINKAGGNLLTNEGIVSSSSISEYLIETLPGWQVDDFLDSSSVPFGFSKSDDMLAVFNADVERNMCSFSPESMGIWVPQAPTTLFTQQVDRQIKFQERKEATNIEASRSRSRDDNFIVPQINPPTGSKRSRLLW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0145 301 SMART bboxneu5 4 47 IPR000315 GO:0008270
Prci2g0145 301 SMART bboxneu5 53 100 IPR000315 GO:0008270
Prci2g0145 301 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Prci2g0145 301 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Prci2g0145 301 CDD Bbox1_BBX-like 57 100 - -
Prci2g0145 301 MobiDBLite consensus disorder prediction 280 294 - -
Prci2g0145 301 MobiDBLite consensus disorder prediction 140 161 - -
Prci2g0145 301 FunFam B-box zinc finger protein 21 1 98 - -
Prci2g0145 301 MobiDBLite consensus disorder prediction 269 301 - -
Prci2g0145 301 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Prci2g0145 301 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 291 - -
Prci2g0145 301 CDD Bbox1_BBX-like 4 47 - -
Prci2g0145 301 Gene3D Classic Zinc Finger 1 99 - -
Prci2g0145 301 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0145 Prci-Chr2 1187120 1188728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0145 1 301 C2C2-CO-like Transcription Factor Family AT1G75540 44.058 1.55e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Prci2g0145 zf-B_box 7.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0145 - - qsa:O6P43_018639 362.459