Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0078 ATGGTCACTGCCACTGATTCTTCCTCTAATCATCATTCGCCGATTAGTGCTGGGGATGCCAATAGCCCTAAGTTCCCGCGAAAAAGCCTGCCATCTCCATGGGTTCAAGTTGTACGAGGCGGTGAGTGCGAATCTCATCCATCGCCGCCTTCATCGTCTTCCTCTTCGTCATCCCTCACAACCTCTGTGCCCGACCAACCACCATTCTCTGATTTTCCTCCGAAGGAGGCGGCTGCATCGCAGTTGCCGGACAGCTCTAATGTTGTTGGCGCAGATAACCCTGACGCTCCTGACGCCAATGCGGGTCGTTCTAAGAGGCCCGCTTGGAGCAAGCCTTCTAACGGCGTTGTCGAGGCTGGTCCTGTAATGGGTGCTGTTTCTTGGCCAGCATTATCTAAATCCACGAAGGTTTCGACCAAAATATCAGCCGACTCCACTTCCAAGACTGCCTTTGATGGATCACTCTCCATTTCTCAGGGGTCTGGCACTTTACACTCCCCTCAAAAACAACCAACTAATAATGCAAAGCCTAACGCTACAACAAACTATGCTGTGCCTCATAGACAAAGGTCAATGAAGCGTGGAGGTAGCAACAGCATTGGGGTTGGTCATGCTCAGAGCAGCTTTTCTAACCCTCCCCCACCCCCACCACCCCCGCCCTTTCCTGTATTTCGTATGCCAGCAAGTAGCTATAGTAACGTGGTGCCAGGGGTTCCAGACCATTCTCAAAGGGAAATCCCTTATAGGAACAGTAACTGGGATACCAGACTACCAGTTGGGGGTTTTGTGCCTGCTGTAAATGACCATTGGAATCCCCCCCGCAGGGGGAATTTTGGGCCCCCTCAGCGTGGGGATGGATCCTACCATAATAACCATGTGGGTAGGCGTGACCAGGATCGTGGAAATCATGCAAACACTAGAGACGCTCAGGTACACCAACAGAGGATGTCTCCTAGGGGATTAGTGAGGCACCCACCTCCTAATACTCCAGCATTTGTTGCCCCTCCACCCATGGGACCCTTTGCTAACTCCATCGGTTTTCCAGAATTTTATTATTTCCCAACTTTACCGCTAGAGCCATTCAGGGGTATGCCGTTTATTACTCATTCTCCTCCTCCTGCCATGTGTCTCCCTGTTGCGGAACTTCCTCTGACAAATATGCTGGTGAACCAAATTGATTACTACTTTAGTGATGCTAATCTAGTGAAAGATGAGTTTTTAAGATCCAACATGGATGAACAGGGTTGGGTTCCAATTACTTTGATAGCAAGCTTCCGTCGGGTTAAAAGTTTGACAAACAACGTTCAGGTGATACTGGATTCAATGAGAAATTCTAATGTTGTGGAAGTACAGGGTGACAAGTTGCGGAGGCGTAATGAATGGATGAAGTGGCTGCCTTCATCTCAGATTCGAACTGATTCTGGTTCATTATCTCCTGTCGGATCAAGTTGCAATAACGTAGCAGCTGATTTTCAAAAGATTGCTCTGGGCAAAGCTTCTACAGATAAAGGTAATTCAGACCCTGCATCAGGGGCCCTAGAAGGAAGATCTCCAACAGATTCTTCCAGTCAACCTCAACTTCCAAACGGTGATACCACGGGGAACACCAATTAA 1614 0.4882 MVTATDSSSNHHSPISAGDANSPKFPRKSLPSPWVQVVRGGECESHPSPPSSSSSSSSLTTSVPDQPPFSDFPPKEAAASQLPDSSNVVGADNPDAPDANAGRSKRPAWSKPSNGVVEAGPVMGAVSWPALSKSTKVSTKISADSTSKTAFDGSLSISQGSGTLHSPQKQPTNNAKPNATTNYAVPHRQRSMKRGGSNSIGVGHAQSSFSNPPPPPPPPPFPVFRMPASSYSNVVPGVPDHSQREIPYRNSNWDTRLPVGGFVPAVNDHWNPPRRGNFGPPQRGDGSYHNNHVGRRDQDRGNHANTRDAQVHQQRMSPRGLVRHPPPNTPAFVAPPPMGPFANSIGFPEFYYFPTLPLEPFRGMPFITHSPPPAMCLPVAELPLTNMLVNQIDYYFSDANLVKDEFLRSNMDEQGWVPITLIASFRRVKSLTNNVQVILDSMRNSNVVEVQGDKLRRRNEWMKWLPSSQIRTDSGSLSPVGSSCNNVAADFQKIALGKASTDKGNSDPASGALEGRSPTDSSSQPQLPNGDTTGNTN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0078 537 Gene3D - 378 468 IPR036388 -
Prci2g0078 537 MobiDBLite consensus disorder prediction 266 324 - -
Prci2g0078 537 MobiDBLite consensus disorder prediction 1 17 - -
Prci2g0078 537 MobiDBLite consensus disorder prediction 1 224 - -
Prci2g0078 537 Pfam La domain 388 444 IPR006630 -
Prci2g0078 537 ProSiteProfiles La-type HTH domain profile. 378 467 IPR006630 -
Prci2g0078 537 SMART la 382 460 IPR006630 -
Prci2g0078 537 PANTHER LUPUS LA PROTEIN-RELATED 125 471 IPR045180 -
Prci2g0078 537 MobiDBLite consensus disorder prediction 515 537 - -
Prci2g0078 537 MobiDBLite consensus disorder prediction 289 306 - -
Prci2g0078 537 CDD LAM 386 458 - -
Prci2g0078 537 MobiDBLite consensus disorder prediction 131 208 - -
Prci2g0078 537 MobiDBLite consensus disorder prediction 209 224 - -
Prci2g0078 537 SUPERFAMILY "Winged helix" DNA-binding domain 377 466 IPR036390 -
Prci2g0078 537 MobiDBLite consensus disorder prediction 498 537 - -
Prci2g0078 537 FunFam la-related protein 1B isoform X2 374 464 - -
Prci2g0078 537 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0078 Prci-Chr2 649052 654338 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0078 K18757 - qsa:O6P43_016303 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0078 2 649052 654338 Prci2g0078 2 649052 654338 ECH