Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0073 ATGACTCAAGACGTGGAAATGAAAGATCATGCTACTCCTTCGCATTCTGTTTCTTCAGCTGTTCCATCTACTTTGCAGAATTTGAAGGAAATAGCATCCCTTATTGAGACCGGTTCCTATTCAAAGGAAGTTCGTAGAATTGCTCGTGCTATTCGCCTTACAATTGCTTTGAGGCGGAAATTGACAGCAGCGGTGCTCTCATCGTTTCTCGATCACGTTCTTACTCCGGGTTCTGAGGCTCACGCGAGATTGTCTGCCTATGTTCCCAAGGAGGACGAGCACGAGATGGAAGTGGACACTGCAACATCTGCTGTTCAAATCCCATCTAAACACCTACTGCCTGAGCTAGAGATCTACTGCTACTTGCTTGTACTGCTGTTTCTTATTGATCAGAAAAGATACAATGAGGCCAAAACCTGTTCCTCGGCAAGTATTGGTCGACTGAAGAATCTGAACAGAAGAACTGTTGATGTCATTGCTTCCAGACTATACTTCTATTACTCATATAGCTATGAACTTACAGGGGATCTTGCTGAAATTCGGGGCAACCTCCTTGCATTGCACCGTATTGCCACTCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAATTACCTCCACTACAACCTATATGACCAAGCAGAGAAGTTAAGGTCTAAGGCACCACGATTTGAAGCACACTCAAACCAGCAGTTCTGTCGTTATCTCTTCTATCTGGGGAAGATTCGGACCATACAGTTGGAGTATACCGATGCAAAAGAGTCACTCCTGCAGGCTGCCAGAAAAGCTCCAGTTGCAGCACGAGGCTTTCGAATTCAATGTAATAAGTGGGCAGTAATTGTGCGCTTGCTGTTGGGAGAAATACCTGAAAGGACTATCTTTATGCAAAGAGGAGCGGAGAAAGCTTTGAGGCCTTACTTCGAGCTTACAAATGCGGTGCGCATTGGTGATTTGGAGCTGTTTAGGAATGTTGCAGAAAAGTTTGCCACCACCTTTAATACCGATGGAACTCATAATTTGATTGTTCGGCTGCGACACAATGTTATCCGAACTGGTTTACGCAACATCAGCGTGTCTTATTCTCGCATCTCACTTGCTGATGTAGCTCGAAAACTGAGGTTGAACTCTGCTAACCCTGTTGCAGATGCTGAGAGTATTGTAGCCAAGGCCATCCGTGATGGGGCAATTGATGCTACATTAGATCATACTAATGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAATGAACCTCAATTGGCTTTTAATTCTCGCATTGCCTTCTGTCTTAACATGCACAATGAGGCTATTAAGGCACTACGTTTCCCACCGAATACACACAAGGAAAGGGAAAGTGCTGAGAAAAGGAGAGAGAGGCAACAGCAAGAGCAAGAACTGGCCAAGCACATAGCAGAGGAAGATGATGATGATTTCTGA 1464 0.4481 MTQDVEMKDHATPSHSVSSAVPSTLQNLKEIASLIETGSYSKEVRRIARAIRLTIALRRKLTAAVLSSFLDHVLTPGSEAHARLSAYVPKEDEHEMEVDTATSAVQIPSKHLLPELEIYCYLLVLLFLIDQKRYNEAKTCSSASIGRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTIFMQRGAEKALRPYFELTNAVRIGDLELFRNVAEKFATTFNTDGTHNLIVRLRHNVIRTGLRNISVSYSRISLADVARKLRLNSANPVADAESIVAKAIRDGAIDATLDHTNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAIKALRFPPNTHKERESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0073 487 Pfam PCI domain 311 416 IPR000717 -
Prci2g0073 487 Coils Coil 454 481 - -
Prci2g0073 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Prci2g0073 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 4 478 - -
Prci2g0073 487 SMART PCI/PINT associated module 174 345 - -
Prci2g0073 487 MobiDBLite consensus disorder prediction 1 21 - -
Prci2g0073 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Prci2g0073 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Prci2g0073 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Prci2g0073 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Prci2g0073 487 MobiDBLite consensus disorder prediction 452 480 - -
Prci2g0073 487 Gene3D - 243 441 - -
Prci2g0073 487 MobiDBLite consensus disorder prediction 452 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0073 Prci-Chr2 629156 634923 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0073 K03033 - qsa:O6P43_016308 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0073 2 629156 634923 Prci8g0720 8 4612641 4618324 CCT
Prci2g0073 2 629156 634923 Prci2g0073 2 629156 634923 ECH