Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0048 ATGTTTTGCCCCAACGTCACGCATTCTTTCCTCTCTTCGCTTTGCGACTTGGTGTCTTCAAAGATTGTCGCCTGCATCTCCGGCCAGAGCTCTAACGATGGTCCTGGTGCTAGCAATGTTTCAGCAGAATTGTCTGATTCAACCGTTCAGCTCAATATCAAGACTTTAGATTCCCACATTTACAGTTTTCAAGTGGATAAGAACATGCTGGTTTCATTGTTGAAGGAGAAAATAGCCGATGAAATTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTCTTGAAGGATAATCATATTCTTTCTGAGTATCACATTGAGCATGGGGATACATTGCATTTGGTTCAAAGGCAGCTGAACCAGTCACAGACTCCTGGTACCAGTTCTGGTGAGACAACTGGTACAAATGGAAACCGAGGAAATGATGCAAGCTCTGGGGCGCATCGTAACCGTGCTGGGCAAATTTCACACAGTGTTGTTCTAGGGACCTTTAATGTGGGGGACCAAGGTGAAGGAATTGTTCCTGACCTTAGTCGGGTCATTGGGGCAGTTTTGAACTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTTACAAATGGTACACAGTCTTCTCCAGGTCCTTCTGGGAATGAAGCTGGCGGAATGCATCCTCAAAATCAGAACCCATTAGGAAATCAAGCTCAGACTGGACAGACATTTCCTAACCAACCATTCCAATCTTTACCTCATGTAGTTCAGATTCCTCTGGCTGCAGGATCCGTAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGGATACTCTTTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTTATCAGACAAATTCATCTTCAACGAGTGGAGGAGAGCAAACACAGGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGCATTGACTGCTGTCTTGCATCGTGCTGAAAGGCTGCTCAGTGGCCATGCTATTGCTGCACTATCTCATATTGCAGGACGCTTGGAACGCGAGGGAACTACTTCTGATCCAAATATAAGGGGTCAAATACAGTCTGAGGCAATGCAAATAGGACTTGCCTTGCAGCACTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGTATGGGACAGTCTTCTGCAGAGTCTGCTGTCAATGCTGGGCCTGCTGTTTATATTTCGCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGGTGGTTCTGTTCCTTCTTCAACTCCGGCAACATTTGGTACAGTTGGTGTTGGAAATGCCCCTCGGAATGTAAACATCCATATACATGCTGGAACTTCTCTTTCACCAATTGTTTCGGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGGTATCAAATGAACGTCGGAATGCTCCTGGTTCTGGTGATTTAGGTTCAATGCATGCTTTACCTGTGAGAAATATCATTGCTGCAGCTGTACCTTCATACCCTCCTGGCACTGGGACCAGTAGTGGTATGCAATCCAGTGGTGTTTCTACTTCACAACCGCCTTCTGATTCAGTTGCATTATCATCTGTTATAGCTGAAATCAATTCTCGTGCTAGACACATTTTTGGAAATATGCAAGGAGATAATACAGTTCTGTCAGGTCAAGTGGAGTCAACCAACCGGGACTTGCCTGTTGGAAGGGAATCACAACCTGCTACTGGAAATGAACAGCTAGATACCATGGAGGCGAATGCTGTTGAAGCTTCCAGGGTGTCTTCAGTTGCTTGCACATCTGAAAGTGGAGTATGTCAGCCCCAGCATGAGGCAGCCCAAACTTGTAAGAATGAGGGGGGAGGTGTTTTGAGCAACACATTTGGCTCTTCCAATCAAGATTCATTAAGTTGGTCAAGAGGAGAAAAAATATCAAAGCCAGAAAATGCACAAGAAAATGCTCCATCTGCTGGTGAAAAACATGCAACTGAAAGCGCCAAAGCTGTTCCCCTTGGACTGGGTGCGAGTGGCTTGGGGCATAAGAGGAGAATGAGACTGCAACATCCTGTAGATAGAGGTGCTGATGATGGATCAGCCAGTTCTTCAGGTAATCAACATCAGCAAGCCAGGACAAGTGGGCATAATATATTGCAAGCTCTTGCAAGTCATGGAACTTCTATGAACCAGAGAAATGCTAATGGTCCATCCCAAGTGCCCCCTTCTCCTGGTAATGGCCAGATTGATGTGGCTGGTGTTATGTCTCAGGTCTTGCATAGCCCTGCTTTGAATGGTTTGTTAGCAGGGGTTTCACAGCAGACTGGAGTCGGCTCACCTGATATCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAAGGTAGTGGCATTGACTTTTCAAGGATGCTCCAACAGATGATACCCATTGTATCTCAAGCTCTTGGAGGTGGAACTCCTCAGTCATTCCCTGCTGAAAGGAGGGATCCCCAGGCACTCTATGGTGATGGAACGCATGGCAGAGATGAAAACTTTGATCATCAGAGTTTACAGATCAATCTCCAACCAGTGGTAGAGAGGATGGAACACGTTAGTACACGATCAGATGTATTCCGTGCGGTGGTGGAAAATGCTATTCGGCTATCCAGAGGGGGAAGTTCTTATGGTGGTCTTCTGGATGAGTTGTGTAGTGATGAGTATCTTCCCGGTGACTATATGGAGATGTTACGACACGATGTTAGTCGGCGGCTGAATGGGAATTCTGGGCGAGACTAG 2883 0.4641 MFCPNVTHSFLSSLCDLVSSKIVACISGQSSNDGPGASNVSAELSDSTVQLNIKTLDSHIYSFQVDKNMLVSLLKEKIADEIGVPVGQQRLIFRGKVLKDNHILSEYHIEHGDTLHLVQRQLNQSQTPGTSSGETTGTNGNRGNDASSGAHRNRAGQISHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGIGGQSTGGVTNGTQSSPGPSGNEAGGMHPQNQNPLGNQAQTGQTFPNQPFQSLPHVVQIPLAAGSVTVPSLSAPIPHSLDTLSEFINRMEQTLSQNGYQTNSSSTSGGEQTQVELPSNPQGLPTVEALTAVLHRAERLLSGHAIAALSHIAGRLEREGTTSDPNIRGQIQSEAMQIGLALQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSVPSSTPATFGTVGVGNAPRNVNIHIHAGTSLSPIVSAIGSRPNNGEGVSNERRNAPGSGDLGSMHALPVRNIIAAAVPSYPPGTGTSSGMQSSGVSTSQPPSDSVALSSVIAEINSRARHIFGNMQGDNTVLSGQVESTNRDLPVGRESQPATGNEQLDTMEANAVEASRVSSVACTSESGVCQPQHEAAQTCKNEGGGVLSNTFGSSNQDSLSWSRGEKISKPENAQENAPSAGEKHATESAKAVPLGLGASGLGHKRRMRLQHPVDRGADDGSASSSGNQHQQARTSGHNILQALASHGTSMNQRNANGPSQVPPSPGNGQIDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDILRNMLQQFTQSPQMRNTVNQIAQQVGSQDMGNMFAGMERGQGSGIDFSRMLQQMIPIVSQALGGGTPQSFPAERRDPQALYGDGTHGRDENFDHQSLQINLQPVVERMEHVSTRSDVFRAVVENAIRLSRGGSSYGGLLDELCSDEYLPGDYMEMLRHDVSRRLNGNSGRD 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0048 960 MobiDBLite consensus disorder prediction 194 242 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 706 720 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 735 752 - -
Prci2g0048 960 SMART ubq_7 49 120 IPR000626 GO:0005515
Prci2g0048 960 MobiDBLite consensus disorder prediction 735 757 - -
Prci2g0048 960 SUPERFAMILY Ubiquitin-like 45 122 IPR029071 -
Prci2g0048 960 MobiDBLite consensus disorder prediction 634 667 - -
Prci2g0048 960 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 36 959 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 512 536 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 634 687 - -
Prci2g0048 960 PRINTS Ubiquitin signature 80 100 IPR019956 -
Prci2g0048 960 PRINTS Ubiquitin signature 101 122 IPR019956 -
Prci2g0048 960 Pfam Ubiquitin family 51 121 IPR000626 GO:0005515
Prci2g0048 960 MobiDBLite consensus disorder prediction 513 536 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 699 720 - -
Prci2g0048 960 Gene3D - 38 133 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 471 495 - -
Prci2g0048 960 MobiDBLite consensus disorder prediction 288 312 - -
Prci2g0048 960 ProSiteProfiles Ubiquitin domain profile. 49 124 IPR000626 GO:0005515
Prci2g0048 960 MobiDBLite consensus disorder prediction 123 154 - -
Prci2g0048 960 ProSitePatterns Ubiquitin domain signature. 75 100 IPR019954 -
Prci2g0048 960 CDD Ubl_ubiquitin_like 51 118 - -
Prci2g0048 960 FunFam Large proline-rich protein BAG6 41 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0048 Prci-Chr2 419766 437826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0048 49 120 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.667 1.02e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0048 - - gmx:100811870 1184.86