Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0046 ATGTTTTGCCCCAACGTCACGCATTCTTTCCTCTCTTCGCTTTGCGACTTGGTGTCTTCAAAGATTGTCGCCTGCATCTCCGGCCAGAGCTCTAACGATGGTCCTGGTGCTAGCAATGTTTCAGCAGAATTGTCTGATTCAACCGTTCAGCTCAATATCAAGACTTTAGATTCCCACATTTACAGTTTTCAAGTGGATAAGAACATGCTGGTTTCATTGTTGAAGGAGAAAATAGCCGATGAAATTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTCTTGAAGGATAATCATATTCTTTCTGAGTATCACATTGAGCATGGGGATACATTGCATTTGGTTCAAAGGCAGCTGAACCAGTCACAGACTCCTGGTACCAGTTCTGGTGAGACAACTGGTACAAATGGAAACCGAGGAAATGATGCAAGCTCTGGGGCGCATCGTAACCGTGCTGGGCAAATTTCACACAGTGTTGTTCTAGGGACCTTTAATGTGGGGGACCAAGGTGAAGGAATTGTTCCTGACCTTAGTCGGGTCATTGGGGCAGTTTTGAACTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTTACAAATGGTACACAGTCTTCTCCACCAAATCCATCTACTCAGGGTCCTTCTGGGAATGAAGCTGGCGGAATGCATCCTCAAAATCAGAACCCATTAGGAAATCAAGCTCAGACTGGACAGACATTTCCTAACCAACCATTCCAATCTTTACCTCATGTAGTTCAGATTCCTCTGGCTGCAGGATCCGTAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGGATACTCTTTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTTATCAGACAAATTCATCTTCAACGAGTGGAGGAGAGCAAACACAGGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGCATTGACTGCTGTCTTGCATCGTGCTGAAAGGCTGCTCAGTGGCCATGCTATTGCTGCACTATCTCATATTGCAGGACGCTTGGAACGCGAGGGAACTACTTCTGATCCAAATATAAGGGGTCAAATACAGTCTGAGGCAATGCAAATAGGACTTGCCTTGCAGCACTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGTATGGGACAGTCTTCTGCAGAGTCTGCTGTCAATGCTGGGCCTGCTGTTTATATTTCGCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGGTGGTTCTGTTCCTTCTTCAACTCCGGCAACATTTGGTACAGTTGGTGTTGGAAATGCCCCTCGGAATGTAAACATCCATATACATGCTGGAACTTCTCTTTCACCAATTGTTTCGGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGGTATCAAATGAACGTCGGAATGCTCCTGGTTCTGGTGATTTAGGTTCAATGCATGCTTTACCTGTGAGAAATATCATTGCTGCAGCTGTACCTTCATACCCTCCTGGCACTGGGACCAGTAGTGGTATGCAATCCAGTGGTGTTTCTACTTCACAACCGCCTTCTGATTCAGTTGCATTATCATCTGTTATAGCTGAAATCAATTCTCGTGCTAGACACATTTTTGGAAATATGCAAGGAGATAATACAGTTCTGTCAGGTCAAGTGGAGTCAACCAACCGGGACTTGCCTGTTGGAAGGGAATCACAACCTGCTACTGGAAATGAACAGCTAGATACCATGGAGGCGAATGCTGTTGAAGCTTCCAGGGTGTCTTCAGTTGCTTGCACATCTGAAAGTGGAGTATGTCAGCCCCAGCATGAGGCAGCCCAAACTTGTAAGAATGAGGGGGGAGGTGTTTTGAGCAACACATTTGGCTCTTCCAATCAAGATTCATTAAGTTGGTCAAGAGGAGAAAAAATATCAAAGCCAGAAAATGCACAAGAAAATGCTCCATCTGCTGGTGAAAAACATGCAACTGAAAGCGCCAAAGCTGTTCCCCTTGGACTGGGTGCGAGTGGCTTGGGGCATAAGAGGAGAATGAGACTGCAACATCCTGTAGATAGAGGTGCTGATGATGGATCAGCCAGTTCTTCAGGTAATCAACATCAGCAAGCCAGGACAAGTGGGCATAATATATTGCAAGCTCTTGCAAGTCATGGAACTTCTATGAACCAGAGAAATGCTAATGGTCCATCCCAAGTGCCCCCTTCTCCTGGTAATGGCCAGATTGATGTGGCTGGTGTTATGTCTCAGGTCTTGCATAGCCCTGCTTTGAATGGTTTGTTAGCAGGGGTTTCACAGCAGACTGGAGTCGGCTCACCTGATATCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAAGGTAGTGGCATTGACTTTTCAAGGATGCTCCAACAGATGATACCCATTGTATCTCAAGCTCTTGGAGGTGGAACTCCTCAGTCATTCCCTGCTGAAAGGAGGGATCCCCAGGCACTCTATGGTGATGGAACGCATGGCAGAGATGAAAACTTTGATCATCAGAGTTTACAGATCAATCTCCAACCAGTGGTAGAGAGGATGGAACACGTTAGTACACGATCAGATGTATTCCGTGCGGTGGTGGAAAATGCTATTCGGCTATCCAGAGGGGGAAGTTCTTATGGTGGTCTTCTGGATGAGTTGTGTAGTGATGAGTATCTTCCCGGTGACTATATGGAGATGTTACGACACGATGTTAGTCGGCGGCTGAATGGGAATTCTGGGCGAGACTAG 2901 0.464 MFCPNVTHSFLSSLCDLVSSKIVACISGQSSNDGPGASNVSAELSDSTVQLNIKTLDSHIYSFQVDKNMLVSLLKEKIADEIGVPVGQQRLIFRGKVLKDNHILSEYHIEHGDTLHLVQRQLNQSQTPGTSSGETTGTNGNRGNDASSGAHRNRAGQISHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGIGGQSTGGVTNGTQSSPPNPSTQGPSGNEAGGMHPQNQNPLGNQAQTGQTFPNQPFQSLPHVVQIPLAAGSVTVPSLSAPIPHSLDTLSEFINRMEQTLSQNGYQTNSSSTSGGEQTQVELPSNPQGLPTVEALTAVLHRAERLLSGHAIAALSHIAGRLEREGTTSDPNIRGQIQSEAMQIGLALQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSVPSSTPATFGTVGVGNAPRNVNIHIHAGTSLSPIVSAIGSRPNNGEGVSNERRNAPGSGDLGSMHALPVRNIIAAAVPSYPPGTGTSSGMQSSGVSTSQPPSDSVALSSVIAEINSRARHIFGNMQGDNTVLSGQVESTNRDLPVGRESQPATGNEQLDTMEANAVEASRVSSVACTSESGVCQPQHEAAQTCKNEGGGVLSNTFGSSNQDSLSWSRGEKISKPENAQENAPSAGEKHATESAKAVPLGLGASGLGHKRRMRLQHPVDRGADDGSASSSGNQHQQARTSGHNILQALASHGTSMNQRNANGPSQVPPSPGNGQIDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDILRNMLQQFTQSPQMRNTVNQIAQQVGSQDMGNMFAGMERGQGSGIDFSRMLQQMIPIVSQALGGGTPQSFPAERRDPQALYGDGTHGRDENFDHQSLQINLQPVVERMEHVSTRSDVFRAVVENAIRLSRGGSSYGGLLDELCSDEYLPGDYMEMLRHDVSRRLNGNSGRD 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0046 966 MobiDBLite consensus disorder prediction 640 693 - -
Prci2g0046 966 FunFam Large proline-rich protein BAG6 41 134 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 519 542 - -
Prci2g0046 966 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 36 965 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 705 726 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 294 318 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 477 501 - -
Prci2g0046 966 SMART ubq_7 49 120 IPR000626 GO:0005515
Prci2g0046 966 MobiDBLite consensus disorder prediction 197 248 - -
Prci2g0046 966 SUPERFAMILY Ubiquitin-like 45 122 IPR029071 -
Prci2g0046 966 Gene3D - 38 133 - -
Prci2g0046 966 PRINTS Ubiquitin signature 80 100 IPR019956 -
Prci2g0046 966 PRINTS Ubiquitin signature 101 122 IPR019956 -
Prci2g0046 966 ProSiteProfiles Ubiquitin domain profile. 49 124 IPR000626 GO:0005515
Prci2g0046 966 MobiDBLite consensus disorder prediction 741 758 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 741 763 - -
Prci2g0046 966 Pfam Ubiquitin family 51 121 IPR000626 GO:0005515
Prci2g0046 966 MobiDBLite consensus disorder prediction 712 726 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 123 154 - -
Prci2g0046 966 MobiDBLite consensus disorder prediction 640 673 - -
Prci2g0046 966 ProSitePatterns Ubiquitin domain signature. 75 100 IPR019954 -
Prci2g0046 966 MobiDBLite consensus disorder prediction 518 542 - -
Prci2g0046 966 CDD Ubl_ubiquitin_like 51 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0046 Prci-Chr2 419766 437826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0046 49 120 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.667 1.05e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0046 - - gmx:100811870 1182.55