Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0045 ATGGCAGGCCAGAGCTCTAACGATGGTCCTGGTGCTAGCAATGTTTCAGCAGAATTGTCTGATTCAACCGTTCAGCTCAATATCAAGACTTTAGATTCCCACATTTACAGTTTTCAAGTGGATAAGAACATGCTGGTTTCATTGTTGAAGGAGAAAATAGCCGATGAAATTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTCTTGAAGGATAATCATATTCTTTCTGAGTATCACATTGAGCATGGGGATACATTGCATTTGGTTCAAAGGCAGCTGAACCAGTCACAGACTCCTGGTACCAGTTCTGGTGAGACAACTGGTACAAATGGAAACCGAGGAAATGATGCAAGCTCTGGGGCGCATCGTAACCGTGCTGGGCAAATTTCACACAGTGTTGTTCTAGGGACCTTTAATGTGGGGGACCAAGGTGAAGGAATTGTTCCTGACCTTAGTCGGGTCATTGGGGCAGTTTTGAACTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTTACAAATGGTACACAGTCTTCTCCACCAAATCCATCTACTCAGGGTCCTTCTGGGAATGAAGCTGGCGGAATGCATCCTCAAAATCAGAACCCATTAGGAAATCAAGCTCAGACTGGACAGACATTTCCTAACCAACCATTCCAATCTTTACCTCATGTAGTTCAGATTCCTCTGGCTGCAGGATCCGTAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGGATACTCTTTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTTATCAGACAAATTCATCTTCAACGAGTGGAGGAGAGCAAACACAGGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGCATTGACTGCTGTCTTGCATCGTGCTGAAAGGCTGCTCAGTGGCCATGCTATTGCTGCACTATCTCATATTGCAGGACGCTTGGAACGCGAGGGAACTACTTCTGATCCAAATATAAGGGGTCAAATACAGTCTGAGGCAATGCAAATAGGACTTGCCTTGCAGCACTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGTATGGGACAGTCTTCTGCAGAGTCTGCTGTCAATGCTGGGCCTGCTGTTTATATTTCGCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGGTGGTTCTGTTCCTTCTTCAACTCCGGCAACATTTGGTACAGTTGGTGTTGGAAATGCCCCTCGGAATGTAAACATCCATATACATGCTGGAACTTCTCTTTCACCAATTGTTTCGGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGGTATCAAATGAACGTCGGAATGCTCCTGGTTCTGGTGATTTAGGTTCAATGCATGCTTTACCTGTGAGAAATATCATTGCTGCAGCTGTACCTTCATACCCTCCTGGCACTGGGACCAGTAGTGGTATGCAATCCAGTGGTGTTTCTACTTCACAACCGCCTTCTGATTCAGTTGCATTATCATCTGTTATAGCTGAAATCAATTCTCGTGCTAGACACATTTTTGGAAATATGCAAGGAGATAATACAGTTCTGTCAGGTCAAGTGGAGTCAACCAACCGGGACTTGCCTGTTGGAAGGGAATCACAACCTGCTACTGGAAATGAACAGCTAGATACCATGGAGGCGAATGCTGTTGAAGCTTCCAGGGTGTCTTCAGTTGCTTGCACATCTGAAAGTGGAGTATGTCAGCCCCAGCATGAGGCAGCCCAAACTTGTAAGAATGAGGGGGGAGGTGTTTTGAGCAACACATTTGGCTCTTCCAATCAAGATTCATTAAGTTGGTCAAGAGGAGAAAAAATATCAAAGCCAGAAAATGCACAAGAAAATGCTCCATCTGCTGGTGAAAAACATGCAACTGAAAGCGCCAAAGCTGTTCCCCTTGGACTGGGTGCGAGTGGCTTGGGGCATAAGAGGAGAATGAGACTGCAACATCCTGTAGATAGAGGTGCTGATGATGGATCAGCCAGTTCTTCAGGTAATCAACATCAGCAAGCCAGGACAAGTGGGCATAATATATTGCAAGCTCTTGCAAGTCATGGAACTTCTATGAACCAGAGAAATGCTAATGGTCCATCCCAAGTGCCCCCTTCTCCTGGTAATGGCCAGATTGATGTGGCTGGTGTTATGTCTCAGGTCTTGCATAGCCCTGCTTTGAATGGTTTGTTAGCAGGGGTTTCACAGCAGACTGGAGTCGGCTCACCTGATATCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAAGGTAGTGGCATTGACTTTTCAAGGATGCTCCAACAGATGATACCCATTGTATCTCAAGCTCTTGGAGGTGGAACTCCTCAGTCATTCCCTGCTGAAAGGAGGGATCCCCAGGCACTCTATGGTGATGGAACGCATGGCAGAGATGAAAACTTTGATCATCAGAGTTTACAGATCAATCTCCAACCAGTGGTAGAGAGGATGGAACACGTTAGTACACGATCAGATGTATTCCGTGCGGTGGTGGAAAATGCTATTCGGCTATCCAGAGGGGGAAGTTCTTATGGTGGTCTTCTGGATGAGTTGTGTAGTGATGAGTATCTTCCCGGTGACTATATGGAGATGTTACGACACGATGTTAGTCGGCGGCTGAATGGGAATTCTGGGCGAGACTAG 2826 0.4632 MAGQSSNDGPGASNVSAELSDSTVQLNIKTLDSHIYSFQVDKNMLVSLLKEKIADEIGVPVGQQRLIFRGKVLKDNHILSEYHIEHGDTLHLVQRQLNQSQTPGTSSGETTGTNGNRGNDASSGAHRNRAGQISHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGIGGQSTGGVTNGTQSSPPNPSTQGPSGNEAGGMHPQNQNPLGNQAQTGQTFPNQPFQSLPHVVQIPLAAGSVTVPSLSAPIPHSLDTLSEFINRMEQTLSQNGYQTNSSSTSGGEQTQVELPSNPQGLPTVEALTAVLHRAERLLSGHAIAALSHIAGRLEREGTTSDPNIRGQIQSEAMQIGLALQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSVPSSTPATFGTVGVGNAPRNVNIHIHAGTSLSPIVSAIGSRPNNGEGVSNERRNAPGSGDLGSMHALPVRNIIAAAVPSYPPGTGTSSGMQSSGVSTSQPPSDSVALSSVIAEINSRARHIFGNMQGDNTVLSGQVESTNRDLPVGRESQPATGNEQLDTMEANAVEASRVSSVACTSESGVCQPQHEAAQTCKNEGGGVLSNTFGSSNQDSLSWSRGEKISKPENAQENAPSAGEKHATESAKAVPLGLGASGLGHKRRMRLQHPVDRGADDGSASSSGNQHQQARTSGHNILQALASHGTSMNQRNANGPSQVPPSPGNGQIDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDILRNMLQQFTQSPQMRNTVNQIAQQVGSQDMGNMFAGMERGQGSGIDFSRMLQQMIPIVSQALGGGTPQSFPAERRDPQALYGDGTHGRDENFDHQSLQINLQPVVERMEHVSTRSDVFRAVVENAIRLSRGGSSYGGLLDELCSDEYLPGDYMEMLRHDVSRRLNGNSGRD 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0045 941 MobiDBLite consensus disorder prediction 452 476 - -
Prci2g0045 941 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Prci2g0045 941 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Prci2g0045 941 PRINTS Ubiquitin signature 55 75 IPR019956 -
Prci2g0045 941 PRINTS Ubiquitin signature 76 97 IPR019956 -
Prci2g0045 941 MobiDBLite consensus disorder prediction 615 648 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 493 517 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 615 668 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 98 129 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 494 517 - -
Prci2g0045 941 Gene3D - 13 108 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 716 733 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 687 701 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 269 293 - -
Prci2g0045 941 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Prci2g0045 941 MobiDBLite consensus disorder prediction 172 223 - -
Prci2g0045 941 MobiDBLite consensus disorder prediction 716 738 - -
Prci2g0045 941 CDD Ubl_ubiquitin_like 26 93 - -
Prci2g0045 941 FunFam Large proline-rich protein BAG6 16 109 - -
Prci2g0045 941 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 940 - -
Prci2g0045 941 SMART ubq_7 24 95 IPR000626 GO:0005515
Prci2g0045 941 MobiDBLite consensus disorder prediction 680 701 - -
Prci2g0045 941 SUPERFAMILY Ubiquitin-like 20 97 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0045 Prci-Chr2 419741 437826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0045 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.667 1.12e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0045 - - gmx:100811870 1185.24