Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0032 ATGACGGTGGAAGAAGAGGAAGAAGGAGGTGAAACACTGGAAGGGGATAATGAAACACTGGAAGGGGATAATGGGTTGGAGGATTCCGATATGGTGGAAGAAATTCAAAGAGTGATTGAATCGGTAGCTCAGTTTGGGGAATATCGGAAGGCTCACCGAAAAGAATGTCATAATCTTGCGAGGCGGATGAAAATCTTGTTGCCACTAGTCGAAGAAATTCGGGACATGGGTCCGCACATTCCAGAGAAAGGCATAACTTGGTTGAAGGGTTTGAAGGATGCTCTCCTTTTTGCGAAGAAATTGCTGAAAATGTGTAGCGAGGGAAGCAAGATTCACCTGGCGTTCGAGAGCGAAGCGGTTATGTCCAATTTTCGATCTGCCAACGAAAAATTAAGCCGAGCGTTCGACGGTTTCCCTGGTGAAGAATTAGAAATATCAGATGAATTGAAGGAAAAGCTTAAGCTAATGTGCGTCCAACTCAGGCGGGCAAAGAGGCGAAAGGATACACAAGACATAGAACTGGCAATGGATATGATAGCTGCATTTTCCAAAGATGACAGCCGAAATGCTGATAGCGCTATCATCGAGAGGCTTGGACAAAAGCTCGAGCTTCATACTGTCGAGGATCTTATGGAAACTGTTGCTGTAAGGAACCTTGTCCGAGAAAGAAAAGGCAAGCATGCAGAGAGTACCCAGCAAATAATTGACCTTCTTAAGAAATTCAAACAAGCTGCTGGCATGGAAGACACAGATGTTCTTGATGAACCTATCATGCCCAGAATCATTGATAAGTGCGCATCTTTGGTCATCCCTCAAGAATTTCTCTGCCCAATCACCCTAGAAATCATGACAGATCCTGTTATCATCGCGAGCGGACAGACATGTGAAAGGGAAAGCATAGAGAAGTGGTTCGAGTCTAATCGTAATACTTGCCCGAAGACGAGACAAACTTTGGCTCACCTGTCATTGGCACCAAATGAAGCTCTAAAAAATTTGATTTCCGTTTGGTGCGAGGAAAACAACTTTGAGCTCCCTAAAAAAGAAAGTTGTTGGAGTGAAGAAGGTTGCTTAGTGGATCCGAAAGAAGAAATACTGGCTTTGGTAGGGGACCTATCGTCTGTTCAGTTAGAAGTGCAGAGATAGGCAGTGAAGAAGATACGCATGATGTCAAAGGAGAATTCTGGGAGCAGGGTTTTGGTGGCGGAGAACGGGGGAATAGCGCCGTTGGTGCAACTGCTGTCGTATCCAGATTCAAAAATACAGGAGAACGCGGTGACAGCGCTTTTAAATCTATCAATTGACGAGGGCAACAAGGTACTGGTATGCAGAGAAGGAGCGATTCCGGCTATTATAGAAGTATTGCCCAAAGAAAACTCTGCAGCAGCTCTATTCAGCCTGTCAATGTTGGATGAGAATAAAGAAATTGTGGGCCTCTCAAACGGCATTCCCCCTCTAGTAGACTTACTGTGGAACGGGACAGGGAGAGGGAAGAAGGATGCCATCACGGCTCTGTTCGGTTTATCTATGAACCACACAAACAAGGGAAGGGCCATCAGGGCAGGCGTAGCGGCCCCTTTACTCCAATTGCTCAGGGACACCAACTTGGGAATGATTGACGAGGCCCTCTCCATCCTCTTACTTCTTGCCTCCAGCCCTGAGGGACGACAAGAGCTGGGACAGCTCCCTTTCATCCAAACTCTCGTCGACTTCATAAACAAGGAATATGCATTGTGCGTTCTCCTTGACTTGGCTTCCTATAACTCTAACCTCATTCTTGCTGCTCTCCAGTTTGGTGTCTATGAGCACTTGATTGGCATCAAAGAAAGCGGAACAGCTCGAGCCAAGGGTAAAGTACATGCGCTCTTGCACCTCATGAGTAAGAGCGAGCATATTTAA 1896 0.462 MTVEEEEEGGETLEGDNETLEGDNGLEDSDMVEEIQRVIESVAQFGEYRKAHRKECHNLARRMKILLPLVEEIRDMGPHIPEKGITWLKGLKDALLFAKKLLKMCSEGSKIHLAFESEAVMSNFRSANEKLSRAFDGFPGEELEISDELKEKLKLMCVQLRRAKRRKDTQDIELAMDMIAAFSKDDSRNADSAIIERLGQKLELHTVEDLKXETVAVRNLVRERKGKHAESTQQIIDLLKKFKQAAGMEDTDVLDEPIMPRIIDKCASLVIPQEFLCPITLEIMTDPVIIASGQTCERESIEKWFESNRNTCPKTRQTLAHLSLAPNEALKNLISVWCEENNFELPKKESCWSEEGCLVDPKEEILALVGDLSSVQLEVQRXAVKKIRMMSKENSGSRVLVAENGGIAPLVQLLSYPDSKIQENAVTALLNLSIDEGNKVLVCREGAIPAIIEVLRXKENSAAALFSLSMLDENKEIVGLSNGIPPLVDLLWNGTGRGKKDAITALFGLSMNHTNKGRAIRAGVAAPLLQLLRDTNLGMIDEALSILLLLASSPEGRQELGQLPFIQTLVDFIXNKEYALCVLLDLASYNSNLILAALQFGVYEHLIGIKESGTARAKGKVHALLHLMSKSEHI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0032 634 Gene3D - 26 140 IPR036537 GO:0007166
Prci2g0032 634 PANTHER U BOX DOMAIN-CONTAINING 53 629 - -
Prci2g0032 634 CDD RING-Ubox_PUB 272 324 IPR045210 -
Prci2g0032 634 MobiDBLite consensus disorder prediction 1 27 - -
Prci2g0032 634 SUPERFAMILY ARM repeat 366 613 IPR016024 -
Prci2g0032 634 SUPERFAMILY RING/U-box 271 346 - -
Prci2g0032 634 FunFam RING-type E3 ubiquitin transferase 351 634 - -
Prci2g0032 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Prci2g0032 634 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515
Prci2g0032 634 SMART arm_5 394 434 IPR000225 GO:0005515
Prci2g0032 634 SMART arm_5 471 511 IPR000225 GO:0005515
Prci2g0032 634 SMART arm_5 512 552 IPR000225 GO:0005515
Prci2g0032 634 SMART arm_5 435 470 IPR000225 GO:0005515
Prci2g0032 634 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Prci2g0032 634 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Prci2g0032 634 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Prci2g0032 634 Gene3D - 351 634 IPR011989 -
Prci2g0032 634 CDD MLKL_NTD 32 138 - -
Prci2g0032 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515
Prci2g0032 634 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Prci2g0032 634 Coils Coil 146 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0032 Prci-Chr2 288448 291944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0032 31 634 U-box Gene Family AT5G42340 58.699 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0032 - - gmx:100777362 808.135