Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0028 ATGGGAAACTGCCTTGGCAAAATTAGCCGTGCTCCAACTGCGGCAGCATTGGATTTGGAGGGAAGGAGCAACAGTGAAGAGCCAAGTCCGACGGCCGAGATCGTGACGCCAAATCTTAAAATGTTCGGTTTAGACGAGCTGAAGAGCGCCACCCGAAACTTCAGACCCGACACGGTGCTAGGGGAGGGCGGCTTCGGGAGGGTATTCAAGGGATGGATCGACTACAACACCTTGAAGCCATCCAAAATTGGCGTCGGAATCCCCGTCGCCGTCAAGAAATGTAATCCTGACAGTATTCAGGGCTTAGAAGAATGGCAGAGTGAGGTGAGATTCTTGGGGAAGTTCTCCCATCCAAACCTGGTCAAGCTCATCGGCTACTGCTGGGAGGAGAATCAGCTGATGCTTGTGTACGAGTACATGCAGAAGGGCAGCTTGGAAAACCACCTCTTCGGAAGAGGACCTGACCCGCTCGCGTGGGACGTGAGGCTCAAGATCGCCATAGGAGCAGCTCGGGGCCTGGCCTTCCTGCATGCCTCCGAGAAGTCTGTTATCTATCGGGACTTCAAGTCCTCCAACATTTTGCTGGACGGGGGGTTCAATGCCAAGCTTTCAGATTTCGGGCTCGCAAAGCTCGGCCCCGCCAACGGCAGATCCCACATAACCACCAGGGTCATGGGGACGTACGGCTACGCAGCCCCCGAGTATATAGCCACCGGTCATCTGTACGTGAAAAGCGATGTGTACGGATTTGGGGTGGTGCTGTTAGAAATTCTGACGGGGTTAGCGGCACTTGATCCCAACAGGCCCAGCGGCGAACATAATTTGGTGGATTGGAAGAGGCCATGCTTGAGCAGTAAGAAGAAGCTCAAAACCATAATCGACCCAAAGCTGGGACACCGCTATTCCCTGACCGCTGCATTTAACATGTGCCGTCTCATTCTCAAATGTTTAGAATCCGATCCTAAAAATCGACCCTCTATGCAAGATGTCTTGACCACTTTAGAGACAGCCTATCGCACCCCATACGAACCTAAGCCCAGGTCTAAGACCAGGCCCCTGAAGTCCAGTTCTGTCCAACCACCCTCTCCATTTTCAATTCGTTAG 1104 0.5308 MGNCLGKISRAPTAAALDLEGRSNSEEPSPTAEIVTPNLKMFGLDELKSATRNFRPDTVLGEGGFGRVFKGWIDYNTLKPSKIGVGIPVAVKKCNPDSIQGLEEWQSEVRFLGKFSHPNLVKLIGYCWEENQLMLVYEYMQKGSLENHLFGRGPDPLAWDVRLKIAIGAARGLAFLHASEKSVIYRDFKSSNILLDGGFNAKLSDFGLAKLGPANGRSHITTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLAALDPNRPSGEHNLVDWKRPCLSSKKKLKTIIDPKLGHRYSLTAAFNMCRLILKCLESDPKNRPSMQDVLTTLETAYRTPYEPKPRSKTRPLKSSSVQPPSPFSIR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0028 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Prci2g0028 367 MobiDBLite consensus disorder prediction 351 367 - -
Prci2g0028 367 Pfam Protein tyrosine and serine/threonine kinase 58 334 IPR001245 GO:0004672|GO:0006468
Prci2g0028 367 Gene3D Phosphorylase Kinase; domain 1 24 139 - -
Prci2g0028 367 FunFam Serine/threonine-protein kinase BIK1 22 139 - -
Prci2g0028 367 CDD STKc_IRAK 60 335 - -
Prci2g0028 367 ProSiteProfiles Protein kinase domain profile. 54 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g0028 367 PANTHER OS01G0588500 PROTEIN-RELATED 28 336 - -
Prci2g0028 367 ProSitePatterns Protein kinases ATP-binding region signature. 60 93 IPR017441 GO:0005524
Prci2g0028 367 Gene3D Transferase(Phosphotransferase) domain 1 140 350 - -
Prci2g0028 367 SUPERFAMILY Protein kinase-like (PK-like) 31 335 IPR011009 -
Prci2g0028 367 MobiDBLite consensus disorder prediction 335 367 - -
Prci2g0028 367 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 140 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0028 Prci-Chr2 250975 252889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0028 20 334 Glycoside Hydrolase AT3G07070 46.855 4.06e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci2g0028 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0028 - - aprc:113865973 526.168