Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0019 ATGAGAATAAGGTTGTCACAGGACTTGTTGGCTGAAGGGGATACTGTGCGCACAATAGTAAAATTCCTTTCTCATGAACTCTCTAAAGAAAGAGAGGAAGCTGTGTCTTTGCTTTATGAGCTCTCAAAATCAGAAACTTTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTAATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATCTTGACTGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAAATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAGCTCCTTGAAGGTCCACCTGAAACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTCTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCACTGAAAGCTCTTAATCAGATATCATCCTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGCGAGGACTTTGATTCCATCCCATTTGGACAGGATCACCAGACTCTCGTTTCAGAGGACATAGTTCATAATCTACTTCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAGCTTCTCCAAGTCCTGGTTGGACTTACTGGTTCTCCAACTACCGTTCTGAGTGTTGTCACGGCAATCAAAAGCTCTGGTGCCATTATCAGTCTTGTTCAATTTATTGAGGCTCCACAGAAAGATTTACGTGTAGCATCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTACGTGGTTCAGTTGGACAACTGGGCAGTCTAATTAAAGTCATATCAGAAAATACAGGAATTAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCTAGAGTGATTACCCTTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACGTTTGTACTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAATCTTGCTGCACTGTTTATTGAACTGCTTCAGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTCAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACCGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCCCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCAGCTTTATCTACCTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAAGGAATTAAGCCTATACTTGATGTATTACTTGAGAAACGGACAGAAAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGACATAGCCTATGAAGTTTCTGGTGATCAAAATGTGGGCACTGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTAGACAAGATTCCAAACTTCTCAGGAATTTTTTCAAACATGGGATAG 1908 0.4324 MRIRLSQDLLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGQDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVITLRQGEIRGSRFVTPFLEGLVKILARLTFVLADEPDAISFCREHNLAALFIELLQANGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFSNMG 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0019 635 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 631 - -
Prci2g0019 635 Coils Coil 75 98 - -
Prci2g0019 635 Gene3D - 4 110 IPR011989 -
Prci2g0019 635 SUPERFAMILY ARM repeat 8 266 IPR016024 -
Prci2g0019 635 Gene3D - 395 622 IPR011989 -
Prci2g0019 635 SUPERFAMILY ARM repeat 276 625 IPR016024 -
Prci2g0019 635 SMART arm_5 169 214 IPR000225 GO:0005515
Prci2g0019 635 SMART arm_5 412 453 IPR000225 GO:0005515
Prci2g0019 635 SMART arm_5 88 128 IPR000225 GO:0005515
Prci2g0019 635 SMART arm_5 494 535 IPR000225 GO:0005515
Prci2g0019 635 SMART arm_5 539 581 IPR000225 GO:0005515
Prci2g0019 635 Gene3D - 133 308 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0019 Prci-Chr2 186742 190162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0019 6 635 U-box Gene Family AT1G76390 67.880 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0019 - - gmx:100815928 1077