Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0018 ATGATGGCTACAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCTGATGAGAGCTACCACTTTGAGAGGCTGCATATTGAGCCTATTTATGATGCCTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACATTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGTAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGCATAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCAGCGCAGCTGGACATGGCTCGCAGGTCATTGAACATGGGTAGTCCTGAAAATGATACATTACAGGCTTTACATTATGTCCAACACATCTGCCAAAGAAGCCGGTCTAATAAGCATCTTGTCCGTAGTGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAACCCTTAGGATTGTCGTGGAAGAAGACAATGAGAATAAGGACTTGTTGGCTGAAGGGGATACTGTGCGCACAATAGTAAAATTCCTTTCTCATGAACTCTCTAAAGAAAGAGAGGAAGCTGTGTCTTTGCTTTATGAGCTCTCAAAATCAGAAACTTTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTAATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATCTTGACTGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAAATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAGCTCCTTGAAGGTCCACCTGAAACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTCTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCACTGAAAGCTCTTAATCAGATATCATCCTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGCGAGGACTTTGATTCCATCCCATTTGGACAGGATCACCAGACTCTCGTTTCAGAGGACATAGTTCATAATCTACTTCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAGCTTCTCCAAGTCCTGGTTGGACTTACTGGTTCTCCAACTACCGTTCTGAGTGTTGTCACGGCAATCAAAAGCTCTGGTGCCATTATCAGTCTTGTTCAATTTATTGAGGCTCCACAGAAAGATTTACGTGTAGCATCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTACGTGGTTCAGTTGGACAACTGGGCAGTCTAATTAAAGTCATATCAGAAAATACAGGAATTAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCTAGAGTGATTACCCTTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACGTTTGTACTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAATCTTGCTGCACTGTTTATTGAACTGCTTCAGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTCAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACCGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCCCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCAGCTTTATCTACCTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAAGGAATTAAGCCTATACTTGATGTATTACTTGAGAAACGGACAGAAAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGACATAGCCTATGAAGTTTCTGGTGATCAAAATGTGGGCACTGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTAGACAAGATTCCAAACTTCTCAGGAATTTTTTCAAACATGGGATAG 2445 0.4356 MMATSWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSIELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYVQHICQRSRSNKHLVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKDLLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGQDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVITLRQGEIRGSRFVTPFLEGLVKILARLTFVLADEPDAISFCREHNLAALFIELLQANGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFSNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0018 814 SUPERFAMILY ARM repeat 121 445 IPR016024 -
Prci2g0018 814 Pfam Armadillo/beta-catenin-like repeat 142 176 IPR000225 GO:0005515
Prci2g0018 814 SUPERFAMILY ARM repeat 455 804 IPR016024 -
Prci2g0018 814 Gene3D - 120 318 IPR011989 -
Prci2g0018 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 116 IPR013083 -
Prci2g0018 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Prci2g0018 814 Gene3D - 574 804 IPR011989 -
Prci2g0018 814 Gene3D - 319 487 IPR011989 -
Prci2g0018 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 810 - -
Prci2g0018 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Prci2g0018 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Prci2g0018 814 Coils Coil 254 277 - -
Prci2g0018 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Prci2g0018 814 SMART arm_5 348 393 IPR000225 GO:0005515
Prci2g0018 814 SMART arm_5 140 180 IPR000225 GO:0005515
Prci2g0018 814 SMART arm_5 267 307 IPR000225 GO:0005515
Prci2g0018 814 SMART arm_5 591 632 IPR000225 GO:0005515
Prci2g0018 814 SMART arm_5 718 760 IPR000225 GO:0005515
Prci2g0018 814 SMART arm_5 673 714 IPR000225 GO:0005515
Prci2g0018 814 SMART arm_5 182 222 IPR000225 GO:0005515
Prci2g0018 814 SUPERFAMILY RING/U-box 23 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0018 Prci-Chr2 186742 191562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0018 5 814 U-box Gene Family AT1G76390 66.010 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0018 - - gmx:100789746 1403.27