Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0001 ATGGCAAAGAAGCGTGATCTATCATACGCCGCCTCCTCCACCTTTCTTCAGCAACAGTTTCAAAACCCTAACGATTACTGGAATCCAAAGGGATGGGACTGGGACGCTGTCAGATTCGTTGCCCAACCGCTGGACGCTGACAGCCTCGGTGTGGGAGCTCCCGCAACCTCCATGAAAGACCAACAGCTTACAACTGTTAGCAGTTTCCACAAACATCCCGCTGTCGACGATGATGAACATGAAGAAAGCCTTCGGTTGAAACTTGGTGGTCGCCCGCCCTTCAATATGGTGCAGGAGCCCATGTCCCGCCCCAGCAAAAGGTTACGTTCTCGCTCACCTGGCGGACCTTCTTACCCTGTGTGTCAGGTAGATAACTGTAAAGAAGATCTCTCCAATGCCAAAGACTATCACCGCCGACACAAAGTTTGTCAGCCTCATAGCAAAGCCTCTAAAGCCCTCGTCGCTAACCAATTACAACGTTTCTGCCAACAATGTAGCAGATTCCACCCTCTGTCAGAGTTCGATGAGGGGAAGAGAAGTTGTAGGCGTAGACTTGCTGGGCATAACCGTCGAAGAAGAAAAACTCAACCAGAAGATGTCACCTCCCAGCTCCTCGCTGGAAACCAGGATAATGCTACATCTAGCAATTTGGATATAGTCAACTTGTTGACTAAAATTGCTGGTGCGAAAGGGAAATTTGGGGAAAGAAGTAAAACCTGTTCACAACTTCCTCAGAAAGACAGGCTTGTTCATATTCTTGATAGGATAAATTCATTACCTTTGCAAGCTGACCTTGCTGCAAATTTGGCCAATGCTGGAAATTTATGTATGACCGGTCTTGGGCAAACATCTTCTAATCACCATGATAAATTGAACCAGAACAAATCTTCTCCATCAACTATGGACTTGCTTACTGTTCTTTCAGCAACTCTATCAGCATCTGCTCCTGATGCCATTGCTATACTCTCTCAAAAATGTGGGCCCAGTAGTGACAGTGAGAAATCTAGGACAAGTGTTGCTGACAAAACAACTGAGCATAGTCTACAAACAAGGCAACCATTAGAATTTGCTTCAATTGGAGCAGAAAAAAGTAGTGGCAGTTACCAGTCGCCTGTTGAGGATTCAATTGGCCAGGTTCAAGAGACTCCAATAAATTTACCGCTGCAGCTTTTTAGCTCCTCTCCAGAAGATGAAAGCCCACCAAAGATGCCTTCTTCTCGAAAGTATATCTCATCAGACAGTAGTAATCCTGTTGAGGAGATGTCACCTTCATCTTCTCCCTCTTTGGTACAGAAGCAGTTTGCTCTGCAGGGTGTAACTGAAGGGATCAAGTCAGACAAAATTTTAATTGGAAGAGTGACCAATGCACATAAAGAAGCCAGCCTAAGCATTGAGTGTAACATTTCTCTTGATCTTTTTAGAGGGTCAAATAACAGAGTTCAACCTAGTTCTGCGCAAAGTGTTCCTGTTCAAGCTGGGTATACATCTTCGGGATCTGATCATTCACCTGCTAGTTTGAATTCAGATGCTCTGTACAGCTTAGGCCTTAGCCAACTAATCTTTTGGGAATGGATTTCTCTGATATTCCAACAGGATCGTACTGGTCGAATAATGTTCAAACTATTTGATAAGGATCCTAGTCATTTCCCAGGAACACTACGAACTCAGATTTACAATTGGCTTTCTCATAGCCCATCAGAGATGGAGAGCTACATAAGACCTGGCTGTGTGATCTTATCAGTCTATGTTTCCATGTCTTCTGCTGCCTGGGAGCATCTTGAAGAAAATTTTGTTCAATATGTTCATTCTTTAATTCAAACTTCTGATGCTAAATTTTGGAGAAATGGGAGGTTTCTAGTTCATACTGGCAGTCAGGTGGCATTATATAAAGATGGAAAGATACGCTTATGCCAAAGATGGAGAACATGGAGGTCTCCAGAGTTGATATCTGTCTCCCCTTTGGCAATTGTTGGGGGCCAAGAAACATCAATTTCATTAAAGGGTAGAAATCTGTCGACTCCTGGAACCAAGATTCATTGCACAAGTACCAGTTATCACACATCAGAGGAAGTTGTAGGGTCTGTTTTTTCTGGTATGACATATGATGAGATAAAATTGGGTGGATTTAAAGTACACAATGCATGTCCTGGTGTTCTTGGTCGCTGTTTCATTGAGGTTGAGAATGGTTTCAAGGGTGACAGGTTTCCAGTGATAATAGCTGATGCAACTATTTGTAAGGAATTGTGGTTACTTGAGTCTGAATTTGTTAAGGAAGTGAAATTAAGTGATGCCATTGCTGAAAGGCACACTTGTGAATTTGCAAGGACTGAGTCAAGGGAGGAGGTTGTGCACTTTTTGAATGAGCTTGGCTGGCTATTCCAAAGGAAAAGATTCTCATATGCACACGAGGTTCCAGTTTTTTCACTTGACAGGTTCAAATTTTTACTCACATTTTCTGTGGAAAGAAACTGTTTAATATTAGTTAAAACCCTTATGGATATGCTGGTTGGGGAACACTTGGAAGGGGAATGGCTGTCCAAGGGATCAGTGGAGATGCTGAATGCAATTCAGCTCTTGAACCGGGCTGTGAAAAGAAGGCATATAAAAATGGTTGACTTGCTTCTTTGCTATTTCATACCTAGCAAAAATGACACATCCAGGAAATATATATTTCTGCCGAATCTTGGGGGACCTGCTGGCATTACACCTTTACATTTGGCTGCTTGCACATCAGGTTCTGAGGGTATAGTTGACTCTTTGACGAATGATCCTCAAGAGATTGGATTGAAGTGCTGGGAGTCCCTTGCGGATGCAAATGGGCAGACTCCTTTTGCCTACGCCATGATGAGAAATAATCACTCTTATAACGAGCTGATTGCTCGTAAAGTTGCTGATAGGGCAAAATGCCAAGTTTCAGTAACAATTGAAACCGAGATAGAGCAACCATTGTTCAGTGTTCAGCATAAAACAAGCCCCAGCAACGAAGTGGGACAAGGTCAGAGATCTTGTGCTAAGTGTGAGGTTGCAGCAATGCACTACAACGGGAGAGTTCTGGGTTCACACTTCCAGGGACTGCTTCACCGTCCCTACATTCATTCAGTTCTTGCCATTGCTGCCGTCTGCGTTTGTGTTTGTCTATTCTTCCGTGGAGCCCCTGAAATAGGTTCAGTTGCTCCCTTCAAATGGGAAAATTTGGATTATGGCACCATCTAA 3213 0.4351 MAKKRDLSYAASSTFLQQQFQNPNDYWNPKGWDWDAVRFVAQPLDADSLGVGAPATSMKDQQLTTVSSFHKHPAVDDDEHEESLRLKLGGRPPFNMVQEPMSRPSKRLRSRSPGGPSYPVCQVDNCKEDLSNAKDYHRRHKVCQPHSKASKALVANQLQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSQLLAGNQDNATSSNLDIVNLLTKIAGAKGKFGERSKTCSQLPQKDRLVHILDRINSLPLQADLAANLANAGNLCMTGLGQTSSNHHDKLNQNKSSPSTMDLLTVLSATLSASAPDAIAILSQKCGPSSDSEKSRTSVADKTTEHSLQTRQPLEFASIGAEKSSGSYQSPVEDSIGQVQETPINLPLQLFSSSPEDESPPKMPSSRKYISSDSSNPVEEMSPSSSPSLVQKQFALQGVTEGIKSDKILIGRVTNAHKEASLSIECNISLDLFRGSNNRVQPSSAQSVPVQAGYTSSGSDHSPASLNSDALYSLGLSQLIFWEWISLIFQQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSHSPSEMESYIRPGCVILSVYVSMSSAAWEHLEENFVQYVHSLIQTSDAKFWRNGRFLVHTGSQVALYKDGKIRLCQRWRTWRSPELISVSPLAIVGGQETSISLKGRNLSTPGTKIHCTSTSYHTSEEVVGSVFSGMTYDEIKLGGFKVHNACPGVLGRCFIEVENGFKGDRFPVIIADATICKELWLLESEFVKEVKLSDAIAERHTCEFARTESREEVVHFLNELGWLFQRKRFSYAHEVPVFSLDRFKFLLTFSVERNCLILVKTLMDMLVGEHLEGEWLSKGSVEMLNAIQLLNRAVKRRHIKMVDLLLCYFIPSKNDTSRKYIFLPNLGGPAGITPLHLAACTSGSEGIVDSLTNDPQEIGLKCWESLADANGQTPFAYAMMRNNHSYNELIARKVADRAKCQVSVTIETEIEQPLFSVQHKTSPSNEVGQGQRSCAKCEVAAMHYNGRVLGSHFQGLLHRPYIHSVLAIAAVCVCVCLFFRGAPEIGSVAPFKWENLDYGTI 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0001 1070 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Prci2g0001 1070 SUPERFAMILY Ankyrin repeat 858 964 IPR036770 -
Prci2g0001 1070 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 855 IPR044817 GO:0003677
Prci2g0001 1070 MobiDBLite consensus disorder prediction 390 427 - -
Prci2g0001 1070 MobiDBLite consensus disorder prediction 481 501 - -
Prci2g0001 1070 Gene3D - 112 182 IPR036893 GO:0003677|GO:0005634
Prci2g0001 1070 MobiDBLite consensus disorder prediction 324 355 - -
Prci2g0001 1070 MobiDBLite consensus disorder prediction 89 117 - -
Prci2g0001 1070 Gene3D - 849 978 IPR036770 -
Prci2g0001 1070 MobiDBLite consensus disorder prediction 185 207 - -
Prci2g0001 1070 Pfam SBP domain 121 194 IPR004333 GO:0003677
Prci2g0001 1070 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Prci2g0001 1070 FunFam Squamosa promoter-binding-like protein 14 113 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0001 Prci-Chr2 7 18338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0001 1 1070 SBP-box Gene Family AT1G20980 50.416 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci2g0001 SBP 6.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0001 - - pcin:129304075 2103.18