Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci298g0008 ATGTCTGCAGATAATTCAGATGATTCTGATAAACAAATGGAGAACTTGCACATGAACCCAGCGACCAGAGGGAAGGAGAAGCTTGTTAGTAGTAGTGGTGATGAAGTTGATACTGCTGAGAGGGAGAGGCGCAGGAAGATAAATGCATTATTTCGTGGCCTTAAAGCTATGCTGCCTCATGTTCCCTCCAAGGCTGACAGAATCAAAGTGGTGGATGAAACATTGAACTACATAACAACTTTGGAGCAAACTCTGGAAAATTTGGAAAAGAAGAAGATGGAGCGATCACTTCGATCGTCTGTCTCTTCTAATGCTGGCCATCCCAGTGGTACTTCCAGAGATGCTTTCATGTCTGAACAAGTAGCTTCATCCTCATCACCCACTCCGAGTGCAAGTCCACATGGTTATAATAAACCAGTAGGATTTCAGACTTGGACTTCTCCGAATTTGGTTGTCAACATTTGTGGCAAAGAAGCTCAATTCAGCGTAACCTCTTCTAAGAATTGGTGCCCCTTCAGCACCATCTGCTGTGTTCTAGAGAAGTACAAGATCGAGGTTTTGTCTGCTCACATTTCATGTGACAATGGTCGTAGGTTCTATATGTTTCAAGCACAAGTGAGCGGAGATTCGGATCAGGTTCCAGGGGCACTATCAGCAGAGGAAACATTCAAGCAAGCTGCTGAAGAAATTATTCTGCGTATCACTTGA 708 0.4393 MSADNSDDSDKQMENLHMNPATRGKEKLVSSSGDEVDTAERERRRKINALFRGLKAMLPHVPSKADRIKVVDETLNYITTLEQTLENLEKKKMERSLRSSVSSNAGHPSGTSRDAFMSEQVASSSSPTPSASPHGYNKPVGFQTWTSPNLVVNICGKEAQFSVTSSKNWCPFSTICCVLEKYKIEVLSAHISCDNGRRFYMFQAQVSGDSDQVPGALSAEETFKQAAEEIILRIT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci298g0008 235 CDD bHLH_AtbHLH_like 39 89 IPR045239 -
Prci298g0008 235 SMART finulus 37 87 IPR011598 GO:0046983
Prci298g0008 235 Pfam Helix-loop-helix DNA-binding domain 39 81 IPR011598 GO:0046983
Prci298g0008 235 Gene3D - 37 104 IPR036638 GO:0046983
Prci298g0008 235 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 37 232 IPR044278 GO:0003700|GO:0006355|GO:0009960
Prci298g0008 235 MobiDBLite consensus disorder prediction 92 135 - -
Prci298g0008 235 MobiDBLite consensus disorder prediction 98 135 - -
Prci298g0008 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 81 IPR011598 GO:0046983
Prci298g0008 235 MobiDBLite consensus disorder prediction 1 41 - -
Prci298g0008 235 Coils Coil 71 98 - -
Prci298g0008 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 95 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci298g0008 40 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.498 1.50e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci298g0008 HLH 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci298g0008 - - pcin:129293085 466.463