LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci298g0007	ATGCAAGGTAACAGAAGGACTCTTGGCTCCTTTCCAGCGATTGTAAGTATGTTGCAGGAGCCTAGTTCTAGTGGCTCTGATATGGATCCGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGCTGTCAGATTTTCTGGGATCCTCTGGTGAGAATGCATGTTTATGCACTAGTGATCCTGATGTTCAGAACTTTGGTGGATGGAATGCTGGTGAACCTAGTTCTAGTGTGAATCTTCATAGTCAAGTCAATAATGATGGGCTAAAAGCTGAACATGGTTGGTCTTCTTCATGTGGTGTTTCTACTGAGGATGTTCTAAGAACAGAAGAACGGCAGTTTGATCCAAATAATGTAACTTTCCCTGGCAGCTCAAATACTGACTTACGTGGAAATCAATCCAGAGTTCAGCCTTTCTTCTTGCAAGGTTCCAGCTCCAATCATAGAACCCAGAATGCGGCTTTAAATATGGGTTCCATTGCCAGCCCTGCTAATCATGGGAAAGGAACAGAACCTTGTAGCAGTGATAGTATTCACAATACATATGGATTCACTAGTAAGCATACATCATTTGGTAGTGCTTCCTGTGATCATGTAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGGGGAGATAATGATAATTCAAGCTCTTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGGCAGCTGTGTACTGGAGGAAGTTCAAGCTCTTTTCTAGAAGCTGAAAGCAGTTGCTGGCCTACTGGGACTTTCAATTCTAATAATGCTTCCAGCAGTTTAAATGTGTCTAGACCTTCTGAGGATGTTCTTGTTACTAATCCTCCAGTAGAGCAGGACCCAAGAAATGAGATGAGGCAACTAGCTTCTGATGCATTCCCTTTGATAGGAGTTATGGGAAATGTGAACAGGCCCTTGAGAAACTTTGACAGGAGGATGAATTATCCACAACGACAGGAATCTAGGCATTCTAATCATTCTTCTTCCCGCCAAAGACCTACCTCTCACCCATTTAATGATTCTCTAGAGCTAAGGTTAACAGCTGGAGTTACAGCAGCCAGTTCTGGCGCTCCTCAGTGTCAGTCACATTTTACGCACATCCCTGGTTTGCCAGGGAACACACATCCTTTTCCTTGGAGTGGAGCTTCTAGTTCAAGAGGAGCCGGTTCATCTACTTCTTATAACTCTGCAGAAAGGGAAGTTCGTGAAGAATTGAACTTTAGAATTTTTCCAAGAGACAATACAGAGCACCCCATCCTTGCACCTTCATCTTCTGGACTTGATCCTACAAGTTGGCATGTATCATCTGGTAATGTGAACAATTCTGGAAGTGTACCTCCTGCATCTTGGATTGGACCCAGTTCAAGTGTCAATTCATTAACTAATCCGAGCTGGATTGTTCCCCATGAAGTTCCAACACAGAGCCAGCAAAGATTATCAGAGTTCAGTCCCTGGTCCTTTTTTCCATCAATGAACTCAGTATCTGGCGTTCATAATGTTCATTCTGCCTCATCTTCTACTTCTTCCGGCCCTCCTTCCTTTATTCCAGACATGGGCAACCATCAATCATATCCAAGATTAGCATCATTGATGGAGAGAAGAGGTGATGAAGTTCTTAATGCACCCCATTCATTGCGGGCTTTAGCTGTTGACATTGAGGGGAGACGACGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCAATGCGCAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCGTTCATATATCATGGTATGGCTGAACTTCATGATAGGCACAGGGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGCTGGCATTGGAGGAGCGCATTGGAGATGTGAGCACTGGATTGAGTGAGGATACCATTATGAAGTTGATGAAACATCGGATCTACGTGTCTGTAATGGCCGAGCCTTCAACAGATCTCGAACCTTGTTGTATCTGTCAGGAGGAATACACTGATGGGGAGGATGTAGCCTCACTAGATTGTGAACATGAATTCCACACCAACTGCATCAAGAAGTGGCTAAAGCAGAAGAACCTGTGCCCCATTTGCAAAACAACGGCCTTAGCAACATGA	2145	0.4396	MQGNRRTLGSFPAIVSMLQEPSSSGSDMDPQTSLNHMQNPVDARLSDFLGSSGENACLCTSDPDVQNFGGWNAGEPSSSVNLHSQVNNDGLKAEHGWSSSCGVSTEDVLRTEERQFDPNNVTFPGSSNTDLRGNQSRVQPFFLQGSSSNHRTQNAALNMGSIASPANHGKGTEPCSSDSIHNTYGFTSKHTSFGSASCDHVGTSSGSSGYIVGGDNDNSSSSLVNWGSSCKRKALESTSGQLCTGGSSSSFLEAESSCWPTGTFNSNNASSSLNVSRPSEDVLVTNPPVEQDPRNEMRQLASDAFPLIGVMGNVNRPLRNFDRRMNYPQRQESRHSNHSSSRQRPTSHPFNDSLELRLTAGVTAASSGAPQCQSHFTHIPGLPGNTHPFPWSGASSSRGAGSSTSYNSAEREVREELNFRIFPRDNTEHPILAPSSSGLDPTSWHVSSGNVNNSGSVPPASWIGPSSSVNSLTNPSWIVPHEVPTQSQQRLSEFSPWSFFPSMNSVSGVHNVHSASSSTSSGPPSFIPDMGNHQSYPRLASLMERRGDEVLNAPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMKLMKHRIYVSVMAEPSTDLEPCCICQEEYTDGEDVASLDCEHEFHTNCIKKWLKQKNLCPICKTTALAT	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci298g0007	714	MobiDBLite	consensus disorder prediction	389	408	-	-
	Prci298g0007	714	FunFam	E3 ubiquitin-protein ligase MBR2	634	712	-	-
	Prci298g0007	714	MobiDBLite	consensus disorder prediction	328	351	-	-
	Prci298g0007	714	SMART	ring_2	667	707	IPR001841	-
	Prci298g0007	714	MobiDBLite	consensus disorder prediction	365	380	-	-
	Prci298g0007	714	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	629	712	IPR013083	-
	Prci298g0007	714	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	226	712	IPR045191	GO:0061630
	Prci298g0007	714	Pfam	Ring finger domain	667	708	IPR001841	-
	Prci298g0007	714	SUPERFAMILY	RING/U-box	649	711	-	-
	Prci298g0007	714	MobiDBLite	consensus disorder prediction	365	410	-	-
	Prci298g0007	714	MobiDBLite	consensus disorder prediction	432	451	-	-
	Prci298g0007	714	ProSiteProfiles	Zinc finger RING-type profile.	667	708	IPR001841	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci298g0007	31	714	C3H Transcription Factor Family	AT2G15530	37.115	1.13e-114	359

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci298g0007	-		K19041	gmx:100809024	900.968