Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci279g0001 ATGAGGAACCCACGCAGTGACTCTAGTGGATTAAAGAAAGGTACTTGGACGCCAGAAGAAGACCGCAAGCTCATTGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGTCTAGCAAGGTGTGGGAAGAGTTGCAGACTGAGGTGGCTCAATTATCTGAGACCCGACATCAAAAGAGGCAACTACACCAAGGAAGAAGATGAACTTATCATTAAACTCCACCAACAGCTTGGCAACAGATGGTCTGCTATAGCAGCTAAGCTGCCAGGAAGAACAGACAATGAAATAAAGAACCACTGGCACACCAACCTCAAGAACAAAAGCCAAACTCATCCTCAGAACAACTCAGTCGCTGCTGACAAGGATGAGATTATCCTCAAACCAAGCGACCCATATCATTCTCAAGGCATCATTGATTCAGCAACTTCCACGATCGGCCACGACAACGGGAAATCGGGGTCTGAATCAACCTTGTGCGAATCCTCCGACATAACGACGTCGGAAAGCAACCAGGATTTGGTCGGACATCATGAGTTCTCTTTTCTGGATGCGTATACTGAGCCGATGAGCGGAAATTTCTGGACGGATCCATGCGTGGTTGATTCTGACGTTCTCTATTACCCCCATACTGAAATACCGCCACTCGAGACTGGACCTCAATTCCTTACTCCAATGTCCAATGTCGCACAACTTTGGACTCACAATAATTTCTACGACCAATGTTATGGTCTCTTTTGCAATTATAATCAATAG 774 0.4651 MRNPRSDSSGLKKGTWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWLNYLRPDIKRGNYTKEEDELIIKLHQQLGNRWSAIAAKLPGRTDNEIKNHWHTNLKNKSQTHPQNNSVAADKDEIILKPSDPYHSQGIIDSATSTIGHDNGKSGSESTLCESSDITTSESNQDLVGHHEFSFLDAYTEPMSGNFWTDPCVVDSDVLYYPHTEIPPLETGPQFLTPMSNVAQLWTHNNFYDQCYGLFCNYNQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci279g0001 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Prci279g0001 257 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Prci279g0001 257 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Prci279g0001 257 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Prci279g0001 257 CDD SANT 68 111 IPR001005 -
Prci279g0001 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 171 - -
Prci279g0001 257 MobiDBLite consensus disorder prediction 144 177 - -
Prci279g0001 257 CDD SANT 15 60 IPR001005 -
Prci279g0001 257 Gene3D - 5 66 - -
Prci279g0001 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Prci279g0001 257 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Prci279g0001 257 Gene3D - 68 132 - -
Prci279g0001 257 SMART sant 65 113 IPR001005 -
Prci279g0001 257 SMART sant 12 62 IPR001005 -
Prci279g0001 257 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Prci279g0001 257 FunFam MYB-related transcription factor 12 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci279g0001 2 211 MYB Transcription Factor Family AT1G06180 46.729 3.89e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci279g0001 Myb_DNA-binding 8.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci279g0001 K09422 - pop:7497409 248.825