Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci270g0015 ATGTCTAAGAGGTATTGCAAGTTCTTTGCTCGTGGAGCATGTATCAAAGGGAACCAATGTGAATATTCTCATGACAGAAAGAATCCTTCAATTAATATTTGTAGGTTCCATCAGAAAGGAATATGTGCTTTTGGTGGTCAATGCAAATATAAACATATCCAAACTTCTCAAGCACAGTCTTCAGAACATGGAAGCCAGCTCCTAAATTTTGATAGACATGGAAAGAGTATAAAACTTACGCATCAAGATTACCAAAGGAATTGTGATGCCAGTGAACCCAGTACTGCTTTACCATCAAGAAAAAAGTGTTCTTGTGTTCCTGGAGAACGATGTGTTTACTGTAAAAAGTTCTGCTTGTATCACTCTGAACCAAATGAAAAAGAGGAGCATCTGCAAACTTGTGAGAAAAAGGAAAATTATCTTGAGACTTTGAATAAAAGTCAAGAAATAGAATGCAGAATTTGCTATGAACGTGTTCTTTCAAAGCCTGAAGGAGATGAATGTAAGTTTGGTATTCTTTCTGAGTGCGATCATCCTTTCTGTTTATCATGCATCAGGAATTGGCGTAATAGTGCTCCAACCTCAGCAATAAAGAGAAATGTGAAGACCTGCCCCATGTGCCGGAAGTTATCATATTATGTGATTCCAAGTAGTATTTGGTATTTTACAATGGAAGAGAAACAGGACATTATTGACAACTACAAGACAAGCTGCAAGTTGATTAATTGCAAGCTTTTTGACTTCGGAAATGGATATTGTCCCTTTAGGAATACTTGTTTCTACAGGCATACTGTGAAGCCTGGTTCATATACATGGATACACCACAAACCACCGCCACCTCCACTCAGATCAACTTTTATGAATTTGCTTTATCAATCTGATTTGGGATCATTCATTCCTCCAAATTTGGAGCTTTTCAATGATATGGATTCATCAGAGATGACGCTCAATCAATTTGCTCTATCAGAGATGCCAGTTGGTTCACGGCAGTCTGATGCTGGCATTTCAAATGAAGAAACTGACCCTTTTAGCTTTATTGTTATGTCAGCAGTTTTAGATTCTAGTTCAGACACCACTGATTCTGAAGACTTGAATCTATTTGAGATTATGCCATTAACTGATCAGAGTCCGGATGGTTCATGGCGGTTTGGAACTGAAGGTTTTGATGATCAAGAAACGGATATTGTGCCTCCTCCAGCGGAGCAGGGTGGCTCATCTTTAGCTGATCCTGATATGCCTTCATCAGAGACACTTGGTAGTTCAAGTTTGTCTGGTCATGAAGATCCTGAAGAATCAAATAATGAGGAACGGAATCCAGTGGAGCCGTAA 1329 0.389 MSKRYCKFFARGACIKGNQCEYSHDRKNPSINICRFHQKGICAFGGQCKYKHIQTSQAQSSEHGSQLLNFDRHGKSIKLTHQDYQRNCDASEPSTALPSRKKCSCVPGERCVYCKKFCLYHSEPNEKEEHLQTCEKKENYLETLNKSQEIECRICYERVLSKPEGDECKFGILSECDHPFCLSCIRNWRNSAPTSAIKRNVKTCPMCRKLSYYVIPSSIWYFTMEEKQDIIDNYKTSCKLINCKLFDFGNGYCPFRNTCFYRHTVKPGSYTWIHHKPPPPPLRSTFMNLLYQSDLGSFIPPNLELFNDMDSSEMTLNQFALSEMPVGSRQSDAGISNEETDPFSFIVMSAVLDSSSDTTDSEDLNLFEIMPLTDQSPDGSWRFGTEGFDDQETDIVPPPAEQGGSSLADPDMPSSETLGSSSLSGHEDPEESNNEERNPVEP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci270g0015 442 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Prci270g0015 442 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Prci270g0015 442 SMART c3hfinal6 237 265 IPR000571 GO:0046872
Prci270g0015 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 222 IPR013083 -
Prci270g0015 442 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Prci270g0015 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 25 IPR000571 GO:0046872
Prci270g0015 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 53 IPR000571 GO:0046872
Prci270g0015 442 CDD RING-HC_MKRN 150 208 - -
Prci270g0015 442 ProSiteProfiles Zinc finger RING-type profile. 152 208 IPR001841 -
Prci270g0015 442 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Prci270g0015 442 MobiDBLite consensus disorder prediction 408 427 - -
Prci270g0015 442 MobiDBLite consensus disorder prediction 428 442 - -
Prci270g0015 442 Pfam Zinc finger, C3HC4 type (RING finger) 152 207 IPR018957 GO:0046872
Prci270g0015 442 ProSiteProfiles Zinc finger C3H1-type profile. 237 266 IPR000571 GO:0046872
Prci270g0015 442 SUPERFAMILY RING/U-box 143 214 - -
Prci270g0015 442 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Prci270g0015 442 SUPERFAMILY CCCH zinc finger 31 52 IPR036855 GO:0046872
Prci270g0015 442 Gene3D - 1 66 - -
Prci270g0015 442 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Prci270g0015 442 PANTHER MAKORIN-RELATED 1 308 IPR045072 GO:0000209|GO:0061630
Prci270g0015 442 SMART ring_2 152 207 IPR001841 -
Prci270g0015 442 MobiDBLite consensus disorder prediction 371 442 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci270g0015 zf-C3HC4 5e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci270g0015 K15687 - gmx:100788886 376.326