Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci258g0003 ATGTCGCCGGTGAATGCTAAGGAGGGGTGGAGTGGGGAGGAAGGCAGGCATTACCCTCCCCCACTCGCGTCGCACGAGGACGTGGTCAAGGACCCCACCCTATTTTGGGACACCCTGAGGCGTTTCCACTTCCTCATGGCCACCAAGTTCATGATTCCTGTGATTGGAGGAAAGGAACTGGATTTGCACGTCCTTTACGTGGAGGTTACGAGGAGGAGTGGTTATGAGAAGGTGGTCGTGGACAAGAAATGGAGGGAAGTGGGGAACGTGTTCAGGTTCTCTCCCACTACAACTAGCGCTTCTTTCGTACTGAGGAAACACTACCTGGGTCTTCTTTACCATTACGAACAAGTTCACTTCTTTAAGGCTCGGGGTCCTGTGTCCACTCCATCTGCAGCTGCATTTTCTGTCAGCAACCACTCATGGAGACCAGAATTAGCTATTGTGGAATACTCGCCCCAGCGGATAAACGAGTGTCCCGAATCCCACAATGAAGATAATTCGGGCGGTGAAGTGAAGGGAATGATAGAGGGGAAATTCGACGGAGGGTATTTGGTGTCGGTGAAAGTGGGGACAGAGGTTCTGAGAGGGGTGCTGTACCATCCGGAGCAGTCGGGAACTTGTGCATCCGCTTCGCAGAGCAGGAACGCCATCGTTGTGTACAATGGAAAAGGCGGGCGTGTTGGTCGGAGGAGGAGAAACAGGAGAAGGTGGGACCCAAACTATCCGAAGCCGAACAGGAGTGGCTATAACTTCTTTTTCGCTGAGAAGCATTACAAGCTCAAGGCCCTCTATCCAAACAGAGAAAGGGAATTCACCAAGATGATCGGGCAGTCATGGAGCAGTCTCAGCCCCGAAGAGAGAATGGTTTACCAGAACATTGGGTTGAGAGACAAGGAAAGGTACAAGAGAGAATTGAGGGAGTACAAGGAGAAAATGAAGCTCGGTCCGACGGTGGAGCTTTCGAGCGTTTGA 975 0.519 MSPVNAKEGWSGEEGRHYPPPLASHEDVVKDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVVDKKWREVGNVFRFSPTTTSASFVLRKHYLGLLYHYEQVHFFKARGPVSTPSAAAFSVSNHSWRPELAIVEYSPQRINECPESHNEDNSGGEVKGMIEGKFDGGYLVSVKVGTEVLRGVLYHPEQSGTCASASQSRNAIVVYNGKGGRVGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMKLGPTVELSSV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci258g0003 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 315 - -
Prci258g0003 324 SUPERFAMILY HMG-box 240 313 IPR036910 -
Prci258g0003 324 Gene3D - 22 128 IPR036431 GO:0003677
Prci258g0003 324 SUPERFAMILY ARID-like 24 127 IPR036431 GO:0003677
Prci258g0003 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Prci258g0003 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Prci258g0003 324 Gene3D High mobility group box domain 228 317 IPR036910 -
Prci258g0003 324 MobiDBLite consensus disorder prediction 10 24 - -
Prci258g0003 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Prci258g0003 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Prci258g0003 324 MobiDBLite consensus disorder prediction 1 24 - -
Prci258g0003 324 CDD HMG-box_AtHMGB9-like 243 309 - -
Prci258g0003 324 SMART hmgende2 242 311 IPR009071 -
Prci258g0003 324 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Prci258g0003 324 SMART bright_3 30 121 IPR001606 GO:0003677
Prci258g0003 324 SMART ARID_2 26 116 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci258g0003 16 315 ARID Transcription Factor Family AT1G76110 65.798 2.27e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci258g0003 ARID 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci258g0003 - - gmx:100784746 462.225