Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci253g0005 | ATGTGTAGTAGAGGCCATTGGAGGCCGGCCGAGGATGAGAAGCTTCGAGAGTTGGTGGAGCGTTATGGACCTCATAATTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGGTGGTTCAATCAGCTGGACCCAAGAATTAATAGGAGTCCATTCACAGAGGAAGAAGAAGAGAGGCTTCTGGCTTCTCACAGGATCCACGGAAACAGATGGGCTGTGATTGCGAGGCTTTTTCCAGGACGAACTGATAATGCTGTCAAGAATCACTGGCACGTCATGATGGCTAGGATTCGCCGAGAAAGGTCCAAGCTTTATGCAAAACGGCCTCATCATCATCAGCTCACCACATCACAGTGTTCTCCACTGCGATCAGATCCTCCTAATACTGATGATCATGATCAGGATCATCATCATCATCATCATCGCTCAAGCTATGATACAATTCTTAGGACGACGACCAGTCCTGCTGCTAGTCTTGTTCCTGCTTTTGTTGAGAAATACTATGACAAGCTTGCTTTGCCATCAGCTTATTGTCTCCCTTATAACCCTTTCCTTCAATTTCCCAGAAAGTTTGATCATCACTTTCAAAATCCAGCTTCCTCTTCATCAAAAACTTCATGGAGTAACATACATCCAAATCCGCAGAACACTGATACAGTGTTTAATAAAAGTCATCAATCAGTTGAGTTCTATGACTTTCTTCAAGTAAACACTGATTCTAACAACAGAAGCGAGGTAACAGACAACGCCAGAAGAGAAGACGAGGAAGTGAATCAAGATAGTGAACATAATGTTAGAGGACGACAGAGAAAAGACAGGACTACTGCTGGTGGTAGTGGTGTTCCGTTTATCGATTTTTTATCTGTTAATGGAAGCTCCCAACACAAGTTCGATC | 916 | 0.441 | MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKLYAKRPHHHQLTTSQCSPLRSDPPNTDDHDQDHHHHHHRSSYDTILRTTTSPAASLVPAFVEKYYDKLALPSAYCLPYNPFLQFPRKFDHHFQNPASSSSKTSWSNIHPNPQNTDTVFNKSHQSVEFYDFLQVNTDSNNRSEVTDNARREDEEVNQDSEHNVRGRQRKDRTTAGGSGVPFIDFLSVNGSSQHKFD | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci253g0005 | 305 | MobiDBLite | consensus disorder prediction | 118 | 132 | - | - | |
| Prci253g0005 | 305 | PANTHER | MYB PROTEIN-RELATED | 4 | 204 | - | - | |
| Prci253g0005 | 305 | MobiDBLite | consensus disorder prediction | 114 | 155 | - | - | |
| Prci253g0005 | 305 | Pfam | Myb-like DNA-binding domain | 7 | 67 | - | - | |
| Prci253g0005 | 305 | MobiDBLite | consensus disorder prediction | 203 | 223 | - | - | |
| Prci253g0005 | 305 | FunFam | MYB transcription factor | 4 | 55 | - | - | |
| Prci253g0005 | 305 | ProSiteProfiles | Myb-like domain profile. | 51 | 101 | IPR001005 | - | |
| Prci253g0005 | 305 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 55 | 105 | IPR017930 | - | |
| Prci253g0005 | 305 | MobiDBLite | consensus disorder prediction | 248 | 291 | - | - | |
| Prci253g0005 | 305 | MobiDBLite | consensus disorder prediction | 252 | 280 | - | - | |
| Prci253g0005 | 305 | Gene3D | - | 57 | 126 | - | - | |
| Prci253g0005 | 305 | Gene3D | - | 4 | 55 | - | - | |
| Prci253g0005 | 305 | SMART | sant | 55 | 103 | IPR001005 | - | |
| Prci253g0005 | 305 | SMART | sant | 3 | 52 | IPR001005 | - | |
| Prci253g0005 | 305 | ProSiteProfiles | Myb-like domain profile. | 1 | 50 | IPR001005 | - | |
| Prci253g0005 | 305 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 54 | IPR017930 | - | |
| Prci253g0005 | 305 | CDD | SANT | 58 | 101 | IPR001005 | - | |
| Prci253g0005 | 305 | CDD | SANT | 7 | 48 | IPR001005 | - | |
| Prci253g0005 | 305 | MobiDBLite | consensus disorder prediction | 133 | 153 | - | - | |
| Prci253g0005 | 305 | SUPERFAMILY | Homeodomain-like | 4 | 97 | IPR009057 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci253g0005 | 1 | 300 | MYB Transcription Factor Family | AT1G17950 | 49.505 | 5.31e-81 | 244 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Prci253g0005 | Myb_DNA-bind_6 | 1.4e-16 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci253g0005 | K09422 | - | gmx:100811746 | 314.309 |