Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci246g0003 ATGGGCAACTGTTGCTCTCAGAGCAACGACACCGATGCCCCGGCCGAAGCCACCGGCTCAGCGGCCGATGTTGCCAAGGGAGGATCCTTGAACAATTCCCAAGGAGGCAGCAACAATAACAACAGCGGGGGAGGAGAAGGAGGAGGAGGTGGTGGCAGTAACTCGGTGAAATCATCCCCGGCACCGAATCCTCCTCCGTCCAAGGCCGGTAAGCCTGGGCCGATGGGACCAGTCCTCCAGCGTCCGATGGAGGACGTGAAGGCCACGTACACGATCGGAAAAGAGCTAGGAAGAGGACAATTCGGAGTGACGCATCTTTGCACGCACAAGGCCACCGGACAACAGTACGCGTGCAAGACGATCGCGAAGAGGAAGCTCGCGAACAAAGAAGATATCGAGGACGTGAGGAGGGAGGTTCAGATAATGCATCATTTGGCGGGACAGCCGAACGTGGTGGAGCTTAAAGGAGCGTTTGAGGATAAGCATTCGGTGCATCTGGTGATGGAGTTGTGCGCCGGCGGTGAACTGTTCGATCGGATAATCGAGAAAGGTCATTATACGGAGCGAGCGGCAGCGTCGTTGATGAGGACGATAGTGCAGATCGTTCATACTTGTCATTCTATGGGAGTGATTCATAGAGATCTGAAGCCCGAGAATTTCTTGCTCTTGAACAAGAACGAAGATTCCCCTCTCAAGGCCACCGATTTCGGTTTATCCGTTTTCTTCAAAGAAGGGGAGACATTTAAAGATATTGTTGGGAGTGCATATTATATAGCTCCTGAAGTATTGAAGAGGAAATATGGGCCAGAAGTTGATATATGGAGTATTGGTGTCATGCTCTACATTCTTCTTTGTGGTGTTCCTCCATTTTGGGCAGAATCTGAGCATGGCATCTTCAATGCAATCTTAAGAGGACATGTAGATTTCTCAGCCGATCCATGGCCGTCCATCTCACCATCAGCAAAAGATCTTGTCAAGAAAATGTTGAATTCTGATCCCAAGGCCAGGCTCACAGCCTACCAAGTTCTAAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCCTCTTGACAATGCTGTGCTCAACAGACTCAAACAGTTCAGAGCAATGAACCAATTCAAAAAAGCTGCTTTGAGGGTGATTGCTGGGTGCCTATCAGAGGAAGAAATAATGGGATTGAAGGAAATGTTCAAGAACATGGACACAGATGGAAGTGGAACCATTACAGTAGAAGAGCTCAAGCAAGGCCTTGCTAAACAAGGAACCAAGCTCTCTGAACAAGAAGTTAAACAACTGATGGAAGCTGCTGATGCAGATGGCAATGGAACCATAGATTATGACGAGTTCATCACAGCAACAATGCAGATGAACCGAATGAACAAAGAAGAACATCTCTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTACATTACCATTGAAGAATTAGAACAAGCTCTCAAGGAATTTAACATGCATGACGGCAGGGATATCAAAGAAATCATCTCAGAAATTGACTCAGATCATGACGGAAGGATAAACTATGAAGAGTTTGTAGCAATGATGAGAAAAGGAAACCCAGAAGCCATAACCAAGAAAAGGCGTGATTCATATGTTTGA 1635 0.4703 MGNCCSQSNDTDAPAEATGSAADVAKGGSLNNSQGGSNNNNSGGGEGGGGGGSNSVKSSPAPNPPPSKAGKPGPMGPVLQRPMEDVKATYTIGKELGRGQFGVTHLCTHKATGQQYACKTIAKRKLANKEDIEDVRREVQIMHHLAGQPNVVELKGAFEDKHSVHLVMELCAGGELFDRIIEKGHYTERAAASLMRTIVQIVHTCHSMGVIHRDLKPENFLLLNKNEDSPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFSADPWPSISPSAKDLVKKMLNSDPKARLTAYQVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKAALRVIAGCLSEEEIMGLKEMFKNMDTDGSGTITVEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNKEEHLYTAFQYFDKDNSGYITIEELEQALKEFNMHDGRDIKEIISEIDSDHDGRINYEEFVAMMRKGNPEAITKKRRDSYV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci246g0003 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 84 523 - -
Prci246g0003 544 MobiDBLite consensus disorder prediction 1 15 - -
Prci246g0003 544 ProSiteProfiles EF-hand calcium-binding domain profile. 502 533 IPR002048 GO:0005509
Prci246g0003 544 ProSiteProfiles Protein kinase domain profile. 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci246g0003 544 SUPERFAMILY Protein kinase-like (PK-like) 76 375 IPR011009 -
Prci246g0003 544 MobiDBLite consensus disorder prediction 25 58 - -
Prci246g0003 544 FunFam Calcium-dependent protein kinase 1 356 531 - -
Prci246g0003 544 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Prci246g0003 544 FunFam calcium-dependent protein kinase 1 176 355 - -
Prci246g0003 544 Gene3D - 356 531 - -
Prci246g0003 544 ProSitePatterns Protein kinases ATP-binding region signature. 96 123 IPR017441 GO:0005524
Prci246g0003 544 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Prci246g0003 544 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Prci246g0003 544 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Prci246g0003 544 SMART serkin_6 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci246g0003 544 SMART efh_1 395 423 IPR002048 GO:0005509
Prci246g0003 544 SMART efh_1 502 530 IPR002048 GO:0005509
Prci246g0003 544 SMART efh_1 467 495 IPR002048 GO:0005509
Prci246g0003 544 SMART efh_1 431 459 IPR002048 GO:0005509
Prci246g0003 544 FunFam Calcium-dependent protein kinase 1 92 175 - -
Prci246g0003 544 CDD STKc_CAMK 90 347 - -
Prci246g0003 544 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Prci246g0003 544 Pfam EF-hand domain pair 465 528 IPR002048 GO:0005509
Prci246g0003 544 Gene3D Transferase(Phosphotransferase) domain 1 176 355 - -
Prci246g0003 544 CDD EFh 396 455 IPR002048 GO:0005509
Prci246g0003 544 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Prci246g0003 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Prci246g0003 544 Pfam Protein kinase domain 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci246g0003 544 Gene3D Phosphorylase Kinase; domain 1 91 175 - -
Prci246g0003 544 SUPERFAMILY EF-hand 388 528 IPR011992 -
Prci246g0003 544 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Prci246g0003 544 MobiDBLite consensus disorder prediction 1 80 - -
Prci246g0003 544 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci246g0003 1 541 EF-hand Containing Proteins AT5G12180 80.037 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Prci246g0003 Pkinase 4.1e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci246g0003 K13412 - qsa:O6P43_020973 877.47