Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci244g0004 ATGGAGGAAGATGAGGACAGGGTTTTGCTTAATATTTTGGGCGTAGAGTCTGCCAATCATGAATGCATCGAAAGAGACGTATTAGCTGAGGCACGGAATGACGTGGTGACCATTATTGAAGCTGATAGGAGCTCAAAGGAAGAATCTCCTCAGAAATATGAAAACGTTGGTCCATCATCTATTAGCAAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAAGAAGTGAGAAATGTTGAAAGTGATGGAGATTGTATTGATGGAGGTCCTGACAACAGGGAGCAAGGGACTACCAAGGATAATTCTTCTAATGATTTGAATCTTCAACATGTTCTTGCTACTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAGGATCTTTCAGATTTGTTCAAGAAGAAGCCTTGCAAGAGTATTGATCAGGACAAAGAGAACGAGATCTTTAATTTGGTTGAGGAAGAGCGAAGATCAAAGAGGAAGCCTAAAGAAGTTAAAAGTTTACCAAAAGGCTCAGGGAAACGGCATAAAACAGTTTCATTTAATGATGATGTTGATTTTGATGCAGTTTTAGATGCTGCCTCGGCAGGCTTTGTTGAGACTGAAAGGGACCAATTGGTAAGGAAAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAGCGCCGCTTTCAACAATCAGAAACATCTAGTAGTTATGATGCAAGTCAGGAAGAAAAGACTGATGATCTTGCTTCTTCTAGTCTTGAAAGAGCTGCCCAATCAATATCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAGTCTGAAGATCTCCCGAAGCTTGACCCACCGACCCATCCTTTTGTTAGACTCAAAGTACCACTAAAAGTTTCTCAGTCCCAAGAAAGAGATCTAGAGAAGAAAAATAATTTGAAAAGGCAAAAAAGGCGATCTTTACCTGGTAGGAAATGGACAAAGCGTGTTTCTAGTGAGGAAATACATTCAAGAGAGACTGTTGGTGCATGCTTTCCAGAGGAAGCAAGTGGTTGCATGGATCCTTCCAGTTGCGAAAACTTGGATGCTCAGGATTTTGAACGTGCTGTTCATGAACCTTCTTTTATAACATTAGAAGGCGGGCTAAAAATCCCTGAGAATATTTTTGATGCACTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACCATCCAGGTTTTATCTTTCCTCGGTGCATTGCATTTTAGTGGCATGTACAAACCAAGCATTATCATTTGTCCTGTGACCCTCTTGCGACAGTGGAAAAGGGAAGTTCAAAAATGGTACCCAAAATTTCATGCAGAGCTTTTACATGATTCTGCACGAGACCCTGTTGCTGGAAAGAAGCAATCCAAATGTGATGAATCAGACTATGATAGTAATAGCTCAAGTGACAGTGACTATGAGACCAGTATTCAATCAAAAAACACAAGGAAATGGGAATCCCTGATAAGTCGTGTAATGAGATCAGAATCTGGATTGCTTATCACAACATATGAGCAGCTGAGAATCTTGAGGGACCTGTTACTTGACATTGAATGGGGATATGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCTGTTCCTATAGCGGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGGTGCTTCGTGATTTGATCACACCTTATCTTCTTCGACGGATGAAAGAAGATGTGGATGCCCAGCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGCCTTACTACTGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCTTGGATGGACGGAAGAATTCTCTTTATGGAATTGATGTTATGCGCAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATACAGCAATCCAGACTATGGAAATCCAGAACGCAGTGGAAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAAGGTCATCGGGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTCTTGAGAATTTTTTGACCACTTCTGGTCATAATTACCGGAGAATGGATGGAGTCACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGGGAAGTATTTATATTCATTTTAACAACTAAGGTTGGGGGTTTGGGGACGAATCTTACTGGTGCAGACAGGGTGATTATTTTTGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTGACAGTATATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGCCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAATCCACAGCAGAAAAGATTCTTTAAAGCTCGGGATATGAAAGATCTTTTTACACTGAATGTGGATGATAAAAGTGGGTCAACTGAAACGTCAACTATTTTCAGTCAAATGTCTGAAGATGTAAATATTGTTGGGGCATATGAAGATAAGCAGGATAATCGTAAACATCCCCAAACTGCTGAACCAGGTTCTGATGATGTTGTAGTTAATAGCGATGTCAGGTCAAAAACAAGATCGGTCAAGGGAAAGGGAAAAGAGAAAACAGATCATCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCTATGGGTTACATAGTGCTGTGAACCATGATTTGATCATGAATGCCAATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCTTCCCTGGTTGCACAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGTCGTGACAGCATTGCTGTTCCTACGTGGACTGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTTTTCATCGGAAGTTTGGTTCGACCGTGAATTCCCAGTTGGTAAATAATTGCAAGGTATCTGATGAATTGCCTGGTGATGGAATTAGAAAACTAAATGGATCTGCTGCTGGGGTATCATCTGGCAAGGCCTTATCTTCTGCTGAACTTTTGGCTCAAATCCGGGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTAGAACGCCAGTTTGGTATGGCCATCAACCCATCTAATCAAGCAAGATCTGTGGATGTTGGATCCTCTAGGGCATCTAAAAAGGTAGATGGAGTGCAACCTGAGGTATTGATTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTCGTTCTGATTCATCCAGCATAGTTCAGCATTTTAAGAACAGGATACCCTCGACAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAAAAAGGACCGAATGGATCACATTGGATTCTGAAGCCAGACTATCAAGAATAA 3699 0.4139 MEEDEDRVLLNILGVESANHECIERDVLAEARNDVVTIIEADRSSKEESPQKYENVGPSSISKAELYHKLRAVDFEINAVASTIQEVRNVESDGDCIDGGPDNREQGTTKDNSSNDLNLQHVLATDRLESLKKTKAQLEKDLSDLFKKKPCKSIDQDKENEIFNLVEEERRSKRKPKEVKSLPKGSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDQLVRKGILTPFSNLKGFERRFQQSETSSSYDASQEEKTDDLASSSLERAAQSISEAARARPTTKLLESEDLPKLDPPTHPFVRLKVPLKVSQSQERDLEKKNNLKRQKRRSLPGRKWTKRVSSEEIHSRETVGACFPEEASGCMDPSSCENLDAQDFERAVHEPSFITLEGGLKIPENIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREVQKWYPKFHAELLHDSARDPVAGKKQSKCDESDYDSNSSSDSDYETSIQSKNTRKWESLISRVMRSESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLITPYLLRRMKEDVDAQLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKICNHPDLLEREHAYSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDILENFLTTSGHNYRRMDGVTPIKQRMALIDEFNESREVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDDKSGSTETSTIFSQMSEDVNIVGAYEDKQDNRKHPQTAEPGSDDVVVNSDVRSKTRSVKGKGKEKTDHLDEADEETNILKSLFDAYGLHSAVNHDLIMNANDEEKMRLEEQASLVAQRAAEALRQSRKLRSRDSIAVPTWTGRSGAAGAPSSFHRKFGSTVNSQLVNNCKVSDELPGDGIRKLNGSAAGVSSGKALSSAELLAQIRGNQEKAIGAGLERQFGMAINPSNQARSVDVGSSRASKKVDGVQPEVLIRQICTFLQQRGGRSDSSSIVQHFKNRIPSTDLALFKNLLKEIATLEKGPNGSHWILKPDYQE 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci244g0004 1232 Pfam Helicase conserved C-terminal domain 751 858 IPR001650 -
Prci244g0004 1232 Gene3D - 377 661 IPR038718 -
Prci244g0004 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 612 IPR014001 -
Prci244g0004 1232 SMART ultradead3 397 620 IPR014001 -
Prci244g0004 1232 CDD DEXHc_ERCC6 401 611 - -
Prci244g0004 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 662 IPR027417 -
Prci244g0004 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 925 IPR027417 -
Prci244g0004 1232 FunFam DNA excision repair protein ERCC-6 669 947 - -
Prci244g0004 1232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 749 908 IPR001650 -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 280 294 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 966 986 - -
Prci244g0004 1232 Pfam SNF2-related domain 404 726 IPR000330 GO:0005524|GO:0140658
Prci244g0004 1232 CDD CSB_WHD 1162 1231 - -
Prci244g0004 1232 Coils Coil 121 148 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 167 193 - -
Prci244g0004 1232 CDD SF2_C_SNF 744 869 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 970 986 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 240 341 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 308 322 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 489 514 - -
Prci244g0004 1232 MobiDBLite consensus disorder prediction 92 117 - -
Prci244g0004 1232 FunFam Protein CHROMATIN REMODELING 8 379 661 - -
Prci244g0004 1232 PANTHER SNF2/RAD54 FAMILY MEMBER 170 1214 - -
Prci244g0004 1232 Gene3D - 668 955 IPR027417 -
Prci244g0004 1232 SMART helicmild6 775 858 IPR001650 -
Prci244g0004 1232 Coils Coil 1021 1041 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci244g0004 744 912 RAD5 or RAD16-like Gene Family AT5G22750 33.136 1.04e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci244g0004 SNF2_N 8.4e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci244g0004 K10841 - gmx:100820025 1794.25