Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci239g0004 ATGGAGCCTTTGCTGAAAGGCGAAAGCAGTGGTCAGAGGATGCGACCGCCTGGGATTTTCCATCATCGCTCACATGCTATAGCCTACGGCACGCCCTCCGTGAAAGCGGCAGCACTTGTGGATCTGGCTGAAGACGGCGTCGGCATCCCGGAGCAAATCCTCGATTCGTCTAGATTTCAGAGTTCTGCTAGATTTTATTTTATATTTATTAAATTAAACTTTATATGGTCTCTTGGTTACTTTGCCCTGCTAGTCCTGAATTTCCTCGAGAAACCCTTGTGGTGTGAAAAATATACCGCTTATTCTTGCGAAGATAGGGAGTATTTCTTTCTGGGGCAGCTGCCATATCTAACTGGTGCAGAATGTGTTATTTACGAGGGTATAACTCTTCTTGTGCTTATCGTGCATATTTTTTTCCCGATATCGTATGAAGGCTCCTGCATATATTGGAAAAAAACTGTTAATCAATTGAAGGTGTTGTGTCTGTTAGTTCTGGCTGCTGATATGGTGGTTTATGCTGTGTATTTGTCTCCAGTGACTTTTTATTCTCTACCTGTCAGATTTGCACCTTATGTCAGGGTTCTTCTTTTCATTTTACATATTAGGGAATTACGAGCAACCCTTACCATCTTGGCTGGAATGCTTGGCACATACCTGAATGTCCTGGCCTTGGGGCTTCTGTTTCTTCTTTTCTCAAGTTGGGTGGCCTATGTGATGTTTGAAGATACTCAACAGGGGAAAATAGTATTCACTTCCTATGGCACCACATTGTATCAGATGTTTGTTTTATTTACCACATCCAATAATCCAGATGTTTGGATTCCTGCATACAAGGCTTCACGTTGGTACTGCCTGTTTTTTGTTCTCTTTGTGCTGTTGGGGGTCTACTTTGTCACGAATTTGGTCCTTGCCGTTGTTTATGACAGTTTCAAGAGTGAGCTTGCAAAACAAGTTTTTGAGATGGATCAAATGAGAAGAAATATGTTGGGGAAAGCATTTGATCTGTTAGATGATAATCATGTTGGGTATCTTAACAAAGACCAATGTATTGAACTCTTTCAGGAGCTGAACAAGTACAGGACTTTGCCAAATATTTCCCGGGAAGAATTTGAGTTGATATTTGATGAGCTGGACGATAGTCATGATGTAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAGTTCCAGAAGGAGGATAGTCCATCTTACTTTGAGTACTTTTCATTCTACCAAGCTTCTATCTCCAAGAAGTTGAAAGCCTTTGTGCGGTGCCCCAAGTTTGGATTGCTAATATCCTTCATTCTTATATTGAATCTGATTGCTGTTGTAATTGAGACAACGCTTGATCTACAAAATAATTCTGCTCAAAAGGTGTGGCAAGGGGTTGAGTTTGTTTTCGGGTGGATATATGTAATAGAAATGGCTTTAAAAGTTTATTCATATGGATTTGAGAATTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATGATCACATGGATAATTGTCATCGGGGAAACTATGACTTTTGTTACACCTGATGGGCTGATTTTTTTCTCAAATGGAGAATGGATTCGGTACCTTCTTTTAGCAAGAATGCTGAGGTTGATAAGGCTCCTTATGCATGTCCAGCAATACCGAGCCTTTGTGGCAACCTTCCTAACTCTCATACCAAGTTTGATGCCATACCTTGGAACCATATTTTGTATCTTATGTATTTATTGCTCCCTTGGTGTACAGATCTTCGGTGGAATTGTCAATGCTGGAAATCCCAAATTGGAAACAACAGGCCTTTCTGACAATGACTATCTGATCTTTAATTTTAATGATTATCCAAATGGAATGGTTACACTTTTCAATTTGCTAGTCATGGGAAACTGGCATGTATGGATGCAGAGCTACAAGGAATTAACAGGAACTTCTTGGACCTATCTTTACTTTATTAGCTTCTACTTAATAACTGTTCTGCTGCTTTTGAATTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGAGCTTGAGACGTCTGCTGATACTAGAGAAGAAGATGACAAGGAGGTTGAAGGAGAAAGACATCGAAGACGACGTATTGGCACCAAATCCCGCAGCCAAAGGGTTGATGCTCTTCTTCATCATATGTTGAGCTCTGAGTTGTGTCAAGCACAGCCTTCACATCCATAA 2208 0.4031 MEPLLKGESSGQRMRPPGIFHHRSHAIAYGTPSVKAAALVDLAEDGVGIPEQILDSSRFQSSARFYFIFIKLNFIWSLGYFALLVLNFLEKPLWCEKYTAYSCEDREYFFLGQLPYLTGAECVIYEGITLLVLIVHIFFPISYEGSCIYWKKTVNQLKVLCLLVLAADMVVYAVYLSPVTFYSLPVRFAPYVRVLLFILHIRELRATLTILAGMLGTYLNVLALGLLFLLFSSWVAYVMFEDTQQGKIVFTSYGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLFVLLGVYFVTNLVLAVVYDSFKSELAKQVFEMDQMRRNMLGKAFDLLDDNHVGYLNKDQCIELFQELNKYRTLPNISREEFELIFDELDDSHDVKINKDEFADICNAIALKFQKEDSPSYFEYFSFYQASISKKLKAFVRCPKFGLLISFILILNLIAVVIETTLDLQNNSAQKVWQGVEFVFGWIYVIEMALKVYSYGFENYWRDGQNRFDFMITWIIVIGETMTFVTPDGLIFFSNGEWIRYLLLARMLRLIRLLMHVQQYRAFVATFLTLIPSLMPYLGTIFCILCIYCSLGVQIFGGIVNAGNPKLETTGLSDNDYLIFNFNDYPNGMVTLFNLLVMGNWHVWMQSYKELTGTSWTYLYFISFYLITVLLLLNLVVAFVLEAFFAEMELETSADTREEDDKEVEGERHRRRRIGTKSRSQRVDALLHHMLSSELCQAQPSHP 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci239g0004 735 MobiDBLite consensus disorder prediction 687 712 - -
Prci239g0004 735 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Prci239g0004 735 Pfam Ion transport protein 124 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci239g0004 735 Pfam Ion transport protein 433 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci239g0004 735 SUPERFAMILY Voltage-gated potassium channels 431 676 - -
Prci239g0004 735 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 3 731 IPR044581 GO:0005245
Prci239g0004 735 Gene3D - 556 717 - -
Prci239g0004 735 FunFam Two pore calcium channel protein 1 423 555 - -
Prci239g0004 735 Gene3D - 203 309 - -
Prci239g0004 735 SMART efh_1 369 397 IPR002048 GO:0005509
Prci239g0004 735 SMART efh_1 328 356 IPR002048 GO:0005509
Prci239g0004 735 SUPERFAMILY EF-hand 320 412 IPR011992 -
Prci239g0004 735 MobiDBLite consensus disorder prediction 687 703 - -
Prci239g0004 735 Pfam EF-hand domain pair 329 393 IPR002048 GO:0005509
Prci239g0004 735 CDD EFh 328 393 IPR002048 GO:0005509
Prci239g0004 735 Gene3D - 310 394 - -
Prci239g0004 735 FunFam Two pore calcium channel protein 1 203 314 - -
Prci239g0004 735 FunFam Two pore calcium channel protein 1 556 714 - -
Prci239g0004 735 Gene3D - 422 555 IPR027359 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci239g0004 2 733 Ion Channels AT4G03560 68.250 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci239g0004 K16900 - qsa:O6P43_028812 1119.38