Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci232g0002 ATGTCTAAACCATTGGAACATGATTACATAGGCTTGGCAGCATCAGAGAATCCGTCCATGGAAAAACACTCTGAGAAAATATCATCTCCTTCTTCTGCTGCTTCATCTACTCTTTCTACTGAGAAGGAAAATAGCTCTTCTCTTAATTTCAAAGAGACAGAGCTCAGACTGGGGCTTCCTGGAAGTGATTCTCCTCCTCCCGAGAGGAAATCAGGAAGTGGGATTTCTCTTTTCGGCAAGGATTTGCAGAGTAATCATAATAATAATGATAATACTGCTAATAATGGGTTTGGTTCTTCCTCTTTGAAGAACAACATGGCTGGAGCTAAGAGGGGTTTTTCAGACGCCATTGATGGGGTTGGGTCTTCTGGGAAATGGTGTTTCTCTGTGAGTGAGAAAATTGGGTCTGAAACTGATTTGGGGAAAGGAGCTTCTTTGTTTTCTCCCAGAGGAGGGAATGTTGTGAAGCCTCCTCTCCTTGCTGTAGAAGCTTCAACTACTTCTGAACAAAAAAGCGTTAGAGATGGTGGAATAGTTCAAGAGAATAAGAAATCTCAGGTTGCTGTTGCTGCTACAAATGAACATGGAAGTGCTCCTCCCGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGGTCTTTTCGAAAGAACAGCATGGCCTCTAATTCAACAAAGAATAACGATGAGGGTGAGGGTAAAGCTGGATTTGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAAACCTTCAGCAACTATCTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTTGCTGTGAAAGGCGGCCTAAGCGAGAGCTCTTTGAGGGATCTTCTCCATGGTTCTGAGTATGTTCTTACTTATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGGGATGTTCACTGACTCGTGTAGAAGATTAAGGATCATGAAAGGTTCTGAAGCGATCGGACTCGCTCCAAGGGTGGTGGAAAAATCCAGGAGCCAAAACTAG 1080 0.4435 MSKPLEHDYIGLAASENPSMEKHSEKISSPSSAASSTLSTEKENSSSLNFKETELRLGLPGSDSPPPERKSGSGISLFGKDLQSNHNNNDNTANNGFGSSSLKNNMAGAKRGFSDAIDGVGSSGKWCFSVSEKIGSETDLGKGASLFSPRGGNVVKPPLLAVEASTTSEQKSVRDGGIVQENKKSQVAVAATNEHGSAPPAAKAQVVGWPPIRSFRKNSMASNSTKNNDEGEGKAGFGCLYVKVSMDGAPYLRKVDLKTFSNYLELSSALEKMFSCFTIGQCSSGGLAVKGGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFTDSCRRLRIMKGSEAIGLAPRVVEKSRSQN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci232g0002 359 MobiDBLite consensus disorder prediction 77 98 - -
Prci232g0002 359 Pfam AUX/IAA family 52 350 IPR033389 -
Prci232g0002 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 47 346 IPR003311 GO:0005634|GO:0006355
Prci232g0002 359 MobiDBLite consensus disorder prediction 24 52 - -
Prci232g0002 359 ProSiteProfiles PB1 domain profile. 239 341 IPR000270 GO:0005515
Prci232g0002 359 Gene3D - 234 353 - -
Prci232g0002 359 MobiDBLite consensus disorder prediction 1 98 - -
Prci232g0002 359 SUPERFAMILY CAD & PB1 domains 239 340 - -
Prci232g0002 359 FunFam Auxin-responsive protein 234 351 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci232g0002 243 349 B3 DNA Binding Superfamily AT4G23980 30.841 1.23e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci232g0002 AUX_IAA 1.8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci232g0002 K14484 - qsa:O6P43_018182 438.343