LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci231g0001	ATGATCCCTGATCTTTCTTCTTCTTTAGATTCAGTTCATCAATACCTTCTTGAAGATCATGATCCTTCCTCTATGACTCTCATGAATACCTTCTTCATGTTCAACAACCCTACTTTAAATTTAAACCCTAACTGTGACCCAGATGCTTCACCAGAGCAGGTTGCTAGTAATAACTCCAGTGGTACGGTGTTTTCCGGCGGCGAATATGACACCGCTATGAAACAAGGTGATAGGGTTAGTGTTAACAATGCAGGATCTGAGGCGCGTGAATGTAACGCGCCACCAAGATGGAGGAATTACAGAGGTGTGAGGAGGCGGACATGGGGGAAGTTCGCAGCGGAGATCCGGGATCCAAAGAGGAACGGCGCCAGAACTTGGTTGGGAACTTATGATAGGGAAGAGGATGCAGCTTTGGCGTATGATAGAGCTGCTTTCAAGATGAGAGGTAGAAAAGCAAAGCTCAATTTTCCTCACCTCATTGGATCACAACCGCCACCGGAGCTGGCAAGAGTAGTCGTCGGAAAGAAGTGGCACTGCTCACTGGAACCTTTATCACCGTCAAACAGTACATCTGTGGATGACGGATCTCAAGGGTCATGCAAGAGGAAGAACCTGTCTGGGCTATTGAATAAGATAGCAACAAATGGAAACCTAAGTCAGAAGCTTGAAATGATGTTCATGAAGGCATAG	690	0.4623	MIPDLSSSLDSVHQYLLEDHDPSSMTLMNTFFMFNNPTLNLNPNCDPDASPEQVASNNSSGTVFSGGEYDTAMKQGDRVSVNNAGSEARECNAPPRWRNYRGVRRRTWGKFAAEIRDPKRNGARTWLGTYDREEDAALAYDRAAFKMRGRKAKLNFPHLIGSQPPPELARVVVGKKWHCSLEPLSPSNSTSVDDGSQGSCKRKNLSGLLNKIATNGNLSQKLEMMFMKA	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci231g0001	229	Gene3D	AP2/ERF domain	98	158	IPR036955	GO:0003700\|GO:0006355
	Prci231g0001	229	Pfam	AP2 domain	99	149	IPR001471	GO:0003700\|GO:0006355
	Prci231g0001	229	FunFam	Ethylene-responsive transcription factor 2	98	158	-	-
	Prci231g0001	229	CDD	AP2	99	159	IPR001471	GO:0003700\|GO:0006355
	Prci231g0001	229	ProSiteProfiles	AP2/ERF domain profile.	99	157	IPR001471	GO:0003700\|GO:0006355
	Prci231g0001	229	PANTHER	DNA-BINDING DOMAIN	65	190	IPR044808	GO:0003700\|GO:0009873
	Prci231g0001	229	SMART	rav1_2	99	163	IPR001471	GO:0003700\|GO:0006355
	Prci231g0001	229	PRINTS	Ethylene responsive element binding protein signature	100	111	IPR001471	GO:0003700\|GO:0006355
	Prci231g0001	229	PRINTS	Ethylene responsive element binding protein signature	139	159	IPR001471	GO:0003700\|GO:0006355
	Prci231g0001	229	SUPERFAMILY	DNA-binding domain	99	158	IPR016177	GO:0003677

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci231g0001	100	162	AP2-EREBP Transcription Factor Family	AT2G44840	84.127	5.84e-34	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Prci231g0001		AP2	2.7e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci231g0001	K09286		-	pcin:129296372	211.846