Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci230g0001 ATGCAGAAAATATGGCTTCTTGTGCTTGTAATTTTCTACTGCGACATTTGTTCAAACGGGTTTCCTGCAAGACCCAGTTCTGTCAACATTGGGGCAATTTTATCTTTCAATTCAACCGTTGGCAAAGTTGCAAAAGTTGCAATTGATGCGGCAAAGGATGATATAAATTCCAATCAATCAGTTCTTAATGGAACTAAGCTCAATATTTCATTCCAAGACACTGAATTATCCACTGGTTTTCTCAGCATCATTGATTCATTACTATTGATGGAGAAAGACACAGTGGCCATAATTGGCCCTCAGTACTCTGTGATGGCTCATGTGATTTCACACATAGCCAATGAGCTGCAAGTACCCTTACTATCATTTGCAGCAACAGACCCTACCTTGAATTCTCTTCAATTCCCATATTTTATTAGGACAATAGAGAGTGATCAATTTCAGATGGCTGCTGTGGCAGATATTGTTGACTACTATCAGTGGAGAGATGTGATAGCAATCTATATCGATGATGATCATGGAAGAAATGGGATAGCTGCATTAGAGGATAAGCTAGCTAAGAAACGCTGTAAGATCTCATATAAAGCCCCTCTTAGGCCTAGTAACATAAATAACGAAGAGATAAATAGTGTATTAACTAAGGTCATTATAAGGGAGTCCAGGGTTATAGTCCTTCACATATACCCTAGTTTTGGCCTAGACGTACTTCATGTGGCTAAGACACTAAGCATGATGGAAAGTGGGTATGTCTGGTTGGCCACTGATTGGCTTTCCACAATACTAGATACTTATCCATATGAGTCATCTTCATGCATGAATGACCTCCAAGGTGTTATTACCTTGAGAATGTATACACCTGATTCTAAAATGAAAAAAAATTTCACTTCTAGGTGGAGTAATTTAATAAAGGAGAAAGCTCCTAATCAAAGTCCTTTCATGTGGAACACTTATGGACTATATGCCTACGATACTGTTTGGGTCCTTGCATCTGCACTTAATTCATTTTTCAATAATGGAGGAAATTTATCATTTTCAAATGATTCAAGTTTGAATAGACTAAAAGGGGATAGGTTGGACCTAAATTCAATAGGGGTCTTTGCTAATGGTAGTTTATTGCTGAACGAAACTATGAAGGTCAATAGAACTGGTTTAACAGGTCAAATGATGTTTAGTCCAGATGGTGAGCTTATGAATCCTGCATTTGAGATCATTAATGTGATTGGTACTGGGGTTAGGAGGATTGGCTTTTGGTCTAATTCCTCTAGTTTACATACTAGACAAGCATCTGGTCATTCAAACTCAAGCAAAGGGTTGTATGGTGTGATATGGCCTGGCCAAACAACTGTAACACCTCGTGGTTGGGTTTTTGCCAATGATGGAAGGCGGTTAAGAATTGGAGTGCCTCTCAGAATTAGTTACAATGAATTTGTGTCAAGAATTGAAGGATCTATAATGTTTGGAGGTTATTGTGTAGATGTGTTCACAGCTGCATTGGACTTATTGCCTTATCCAGTTCCATACAATTTTGTCCCATTTGGAGATGGTAAAACTAATCCATTAAATACAGAACTGCTACACAAAATCACAACCAGTGAGTTTGATGCTGTGGTAGGTGACATTACCATTACCACAAACAGAACAAAGATAGTGGATTTCACACAACCATATATTGAGTCTGGGCTTGTTGTCGTGGCTCCAATCAAAAAGTCATACTCCAATGCTTGGGCTTTCCTTAGACCATTTACTCCAATGATGTGGTTTGTGACTGGAATGTCTTTCTTTGTTGTGGGAGCTGTTGTGTGGATTTTAGAACGACGAGTAAATGATGATTTTAGAGGTCCTGCTAGAAGACAATTTGTGACTATTATATGGTTTAGTTTTTCAACCCTATTTTTTGCACATAGAGAAAGAACTCTGAGTACCCTTGGTCGCTTAGTGCTGATAATATGGCTTTTCGTAGTTTTGATACTAAACTCAAGCTACATAGCAAGCCTGACCTCCATTCTCACAGTGGAACAACTTTCTTCCCCTGTGAAAGGAATTGAAAGCTTAGTAACTAGCAAAGAGCTCATTGGCTATCTGCGAGGTTCATTTACAGAGAACTACCTTACTGATGAGCTTAACATAATGAAATCTAGGCTCGTGCCTCTCAATTCTCCATCAGAATATGAGAAAGCCTTAAAGGATGGACCTACCAATGGTGGTGTTGCAGCAATCATCGATGAACGTGCTTACATGGAGCTCTTTCTTGCAACCAGGTGTGAATTTGGAATCGTCGGCCAAGAGTTCACCAAAATGGGTTGGGGTTTCGCTTTTCCAAGAGACTCTCCTTTAGCAATAGACATGTCAACAGCAATCTTGAAGCTATCAGAGAATGGTGGTCTTCAAAGAATACATGACAAATGGCTTTCAAGAAGTGCATGTAGTTCTGAAGGTGCAAAGCAAGGCATAGACAGATTAGAGCTCAAGAGTTTCTGGGGTCTATTCCTTCTCTGTGGCATTGCTTGTTTCATTGCTCTCCTTTGTTATATCATTCGCATGGCCTATCGTTTCAGCCGCCACTCTGATGGCAACCTCATTGCTAGCTTGTCACACTCAGCTCGAATCCGATCATTTATTTCCTTTGTCAATGAAAAGGAAGATGAAGGAAAGAATGGTGCCAAGCCAAAGAGGAGTGGAAAGGTGGCACATGAAGATAGGTCAATGGATGACTCTAACATGTGCAGTGTTCATTATGAAAATGATTCTTCACAATGCTAA 2760 0.396 MQKIWLLVLVIFYCDICSNGFPARPSSVNIGAILSFNSTVGKVAKVAIDAAKDDINSNQSVLNGTKLNISFQDTELSTGFLSIIDSLLLMEKDTVAIIGPQYSVMAHVISHIANELQVPLLSFAATDPTLNSLQFPYFIRTIESDQFQMAAVADIVDYYQWRDVIAIYIDDDHGRNGIAALEDKLAKKRCKISYKAPLRPSNINNEEINSVLTKVIIRESRVIVLHIYPSFGLDVLHVAKTLSMMESGYVWLATDWLSTILDTYPYESSSCMNDLQGVITLRMYTPDSKMKKNFTSRWSNLIKEKAPNQSPFMWNTYGLYAYDTVWVLASALNSFFNNGGNLSFSNDSSLNRLKGDRLDLNSIGVFANGSLLLNETMKVNRTGLTGQMMFSPDGELMNPAFEIINVIGTGVRRIGFWSNSSSLHTRQASGHSNSSKGLYGVIWPGQTTVTPRGWVFANDGRRLRIGVPLRISYNEFVSRIEGSIMFGGYCVDVFTAALDLLPYPVPYNFVPFGDGKTNPLNTELLHKITTSEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKSYSNAWAFLRPFTPMMWFVTGMSFFVVGAVVWILERRVNDDFRGPARRQFVTIIWFSFSTLFFAHRERTLSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSKELIGYLRGSFTENYLTDELNIMKSRLVPLNSPSEYEKALKDGPTNGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGGLQRIHDKWLSRSACSSEGAKQGIDRLELKSFWGLFLLCGIACFIALLCYIIRMAYRFSRHSDGNLIASLSHSARIRSFISFVNEKEDEGKNGAKPKRSGKVAHEDRSMDDSNMCSVHYENDSSQC 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci230g0001 919 MobiDBLite consensus disorder prediction 881 919 - -
Prci230g0001 919 Gene3D - 720 810 - -
Prci230g0001 919 SMART GluR_14 464 805 IPR001320 GO:0015276|GO:0016020
Prci230g0001 919 Pfam Bacterial extracellular solute-binding proteins, family 3 522 804 IPR001638 -
Prci230g0001 919 SUPERFAMILY Periplasmic binding protein-like I 23 454 IPR028082 -
Prci230g0001 919 Gene3D - 46 398 - -
Prci230g0001 919 PIRSF IGluLR_plant 1 918 IPR017103 -
Prci230g0001 919 FunFam Glutamate receptor 700 807 - -
Prci230g0001 919 FunFam Glutamate receptor 144 304 - -
Prci230g0001 919 Gene3D - 144 422 - -
Prci230g0001 919 Gene3D - 454 573 - -
Prci230g0001 919 CDD PBP1_GABAb_receptor_plant 29 423 IPR044440 -
Prci230g0001 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 878 IPR015683 -
Prci230g0001 919 FunFam Glutamate receptor 574 704 - -
Prci230g0001 919 Pfam Ligand-gated ion channel 805 836 IPR001320 GO:0015276|GO:0016020
Prci230g0001 919 Gene3D - 574 709 - -
Prci230g0001 919 FunFam Glutamate receptor 458 574 - -
Prci230g0001 919 MobiDBLite consensus disorder prediction 881 906 - -
Prci230g0001 919 SUPERFAMILY Periplasmic binding protein-like II 439 805 - -
Prci230g0001 919 CDD GluR_Plant 461 803 - -
Prci230g0001 919 Pfam Receptor family ligand binding region 46 408 IPR001828 -
Prci230g0001 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Prci230g0001 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 321 333 - -
Prci230g0001 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 41 57 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci230g0001 5 909 Ion Channels AT3G51480 56.114 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci230g0001 K05387 - gmx:100790502 1399.42