Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci227g0001 ATGAAGTTTCCTTCATTCTCCATTCTACTACTACTCTCTGTGCTTTCTCAATTACTTCAATGTTGGTGCCAACAAGTATACCTCAACCAAACTAACTTCGACTGCTCCGGCAACCGCTCGTCAGAAGGATATCTCTGCAACGGCCTCCAAAAGTCATGCGCCTCCTTTGTGACTTTCAGATCCAGACCTCCTTTTGATACTCCTCTAGCCATTGCTAGTCATCTTGGCTCTGAAGCATCTTCCATAGCCTCCCTCAACAACATCTCAAATGCCAACAAAATTCCTTTCAATCAAATTGTGATAGTGCCTATCGACTGTTCGTGTTTGGGCAATATCTACCAACATGCCGCTTCTTATGCCTTGGAGGCAGGTGACACCTATTATTCTGTTGTCAACATTACTTATCAAGACCTCGCCATTTGTCAGATGTTAGTACGTCGAAATAATTACAGTGCTGACTTTCTTCTAGTGGGTGCCCAGATTACAGTTCCTGTGTTATGTGCTTGTCCCACTACTAACCAGATCTCAGATGGGGTCTCCTCCTTGCTTGTTCACACACTTGACAATGGGGATTCACTAGAGTCAGCCTCACAGGCCTACGGTGTGGATCAACAGACTCTACTGACCTCTAACCTGTTGCCTTCAAACGCAATCATCCCTCCCTTGACCCCTTTCTTAGTTCCACTCAATCCCTCCTCTTGCAAGCTCAATCCACATATGTTCTACTGCACTTGTTCATTCTCCCAGAGATACCTTTCAAACTCAAGTTACAGCACTCTCAATTGTGATCGTCCTCAATCACATCGTTTCCCCCTCAAACTGGTTGCCTCCTTAGGTGTTGGAATTGGTTCTTCATTTTTATGCTTGTTTCTTTTGGGTTACAAGTTACATCAATACCAAAAACAAAAGCAAGAAAGAGTTCGTAAAGAAAAATTGTTCAAGCAAAATGGTGGCCTCTTGCTACAAGAGAAGATGTCATGCAATGGAAACAGCGAGAAAGCAAAACTTTTTACAGAGGAGGAGCTGGAACGAGCAACAGATAACTACAATGAAAGTAGGTTTCTTGGTCAAGGTGGATATGGAACCGTTTATAAAGGAATGTTACCAGATGGCAGCATTGTCGCAGTTAAGAAGTCAAAAGAAATTGTGAGAAACCAGATCGAGACTTTCATTAACGAAGTGGTGATTCTATCCCAAATGAACCACAGGAACATTGTCAAACTCATGGGTTGGTGCTTAGAGACTGAGGCCCCATTATTAGTATATGAATTTATTCCCAATGGAACCCTTTCTCATCACATCCATAACCAGGAACTCGAAGCAAAGCTTTCATGGGACAACCGTCTCAGAATTGCTTGTGAGGTTGCAGGAGCACTGGCCTATATGCATTCTGCAGCTTCTATTCCCATCTTCCATAGAGACATCAAAACTCCCAACATACTATTGGATCACAATTACAGTGCCAAAGTGTCTGATTTTGGGACTTCCAGATCAGTCCCAAATGATAGGACTCACTTAACCACAGTGGTGCAAGGCACTTTTGGGTACATTGATCCTGAATACTTCCAGTCCGGTCAATTCATAGATAAAAGTGATGTATACAGTTTTGGGGTCGTACTTGCAGAGCTCATTACTGGAAGGAAACCCATTACCTTCTCAGAAGAAAATGAGGGTCAAAACCTTGTTGCAGAATTCATTTCTTTGATGAAAAAGGATCAAATTTTTAAGATTTTAGAAGCTAGATGTGTTCACGAAGGAAGGAAAGATGATCTTCTTGGAATTGCAAATCTTGCAAAGAGATGCTTGAGACTGAATGGGAAGAAGAGACCCACAATGAGAGAGGTTTCAGCAGAGCTAGAAGTAATGAGAAAGACACAAAATACCTTGAAAATCATTGAACGTTCTCTTGAGTTTCCTCATGATGTCAGATCAGCTCAGCATGGCACTACTTCTGAATCAGACCAAGATTTCACAGGAGAAGGCATGTCATTGTTTTTCCAAAAAGATTATAGATCCATCTGA 2022 0.4204 MKFPSFSILLLLSVLSQLLQCWCQQVYLNQTNFDCSGNRSSEGYLCNGLQKSCASFVTFRSRPPFDTPLAIASHLGSEASSIASLNNISNANKIPFNQIVIVPIDCSCLGNIYQHAASYALEAGDTYYSVVNITYQDLAICQMLVRRNNYSADFLLVGAQITVPVLCACPTTNQISDGVSSLLVHTLDNGDSLESASQAYGVDQQTLLTSNLLPSNAIIPPLTPFLVPLNPSSCKLNPHMFYCTCSFSQRYLSNSSYSTLNCDRPQSHRFPLKLVASLGVGIGSSFLCLFLLGYKLHQYQKQKQERVRKEKLFKQNGGLLLQEKMSCNGNSEKAKLFTEEELERATDNYNESRFLGQGGYGTVYKGMLPDGSIVAVKKSKEIVRNQIETFINEVVILSQMNHRNIVKLMGWCLETEAPLLVYEFIPNGTLSHHIHNQELEAKLSWDNRLRIACEVAGALAYMHSAASIPIFHRDIKTPNILLDHNYSAKVSDFGTSRSVPNDRTHLTTVVQGTFGYIDPEYFQSGQFIDKSDVYSFGVVLAELITGRKPITFSEENEGQNLVAEFISLMKKDQIFKILEARCVHEGRKDDLLGIANLAKRCLRLNGKKRPTMREVSAELEVMRKTQNTLKIIERSLEFPHDVRSAQHGTTSESDQDFTGEGMSLFFQKDYRSI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci227g0001 673 FunFam Wall-associated receptor kinase 2 319 424 - -
Prci227g0001 673 CDD STKc_IRAK 355 620 - -
Prci227g0001 673 Pfam Protein kinase domain 349 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci227g0001 673 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci227g0001 673 SUPERFAMILY Protein kinase-like (PK-like) 332 621 IPR011009 -
Prci227g0001 673 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Prci227g0001 673 Gene3D Transferase(Phosphotransferase) domain 1 425 639 - -
Prci227g0001 673 SMART serkin_6 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci227g0001 673 FunFam Wall-associated receptor kinase 2 425 638 - -
Prci227g0001 673 Gene3D Phosphorylase Kinase; domain 1 321 424 - -
Prci227g0001 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Prci227g0001 673 SMART LysM_2 56 103 IPR018392 -
Prci227g0001 673 SMART LysM_2 118 164 IPR018392 -
Prci227g0001 673 SMART LysM_2 184 228 IPR018392 -
Prci227g0001 673 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 167 626 IPR045274 GO:0007166
Prci227g0001 673 Pfam LysM domain 66 103 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci227g0001 279 626 Receptor kinase-like Gene Family AT1G16130 55.714 3.51e-133 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Prci227g0001 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci227g0001 - - vun:114186184 810.061