Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2220g0001 ATGTCGAGCAATTCGCTGCCGCCATCGCATCTCTCTAATACATCGCCGACGAACCCTACCGGCTATGATTCCACTTCGAAGATATCATCGCCGGCATCCTCCAGAGCCAAGCTCCAGAAAAGTCCTCCGATTCCGAATCGGTGGACTGCGATAGAGGATGAAGGCGAGCAAAGGAACGAGGAGGCGGTACGTAAACTAGAACAGGAGCGAACCGAAGAAGCTAATCCTACGATTTTGCTTGCATCCTCTTTAGGGCTCAATCACATTCGGACTCGCTCGGCTTCTTCGCCTCTTCGGTTTCCGTCCTTGGCTGGCGCGTCTCCCAGTTCGAGCAAGGATTGCATCGGAACTGAGGATCGAATTGTAGTTTCAACGGATTTGGGAAAGAGAATATATGGAACTCAAAGTAAATTATCGAGAGCTCCTTCCCATGCTGTTCCTCTCACGCAGGGTAACGATGACATATTTGCCAAAGAATTGCAGTCCCCGCGCGTTCAAGCAATACTGCGCGTCACAAGTGGACGCAAGAAGAAACCTATCGATTTCAAAAGCTACTCTCATGAGCTCAACTCAAGAGGAGTCAAAGCTTTCCCAGTTTGGAAACATCGTGTATTCGGGCATATCGAGGAGGTTGAGGTTGCAATCAGAACTAAGTTTGGAAAGCTGAAGGAAGAAGTAGATTCTGACCTAAGTGCTTTTGCCGGAGATTTGGTGGGACTACTGGAAAAAACTTTGGGGTCTCATCCTGAATGTAGAGAGAGCTTGGAGGATCTGTTAATTGTTGCCCAACAATGTGCAATGATGTCGCCCAGCGAGTTTTGGATGAACTGCGAAGCCATTGTTCAGAATTTAGATGACAGGCGTCAAGAGTTACCGATGGGGATTCTCAAGCAAGCTCATACACGCCTACTGTTTATCCTCACTCGATGCACACGTCTCGTGCAGTTCAACAAAGAGAATGGCTATGAACAAGATCACATTCTGGGTCTTCACCAACTCAGTGATCTTGGCATTTATAGAGAGCAAATTTTGCATGCTGTAGAACATAAATCCATTGGTGGAAACGAGATGGCTGAGGAACAGCGAACCAAGTCTGCAGTTAAAGAACCAGACAGTCAGATAACTCAAATTCAAACTGATCGGAATGTGAATACTGCAACTGACACTTCCAGAAGTGGTGATTCAACTGGAAGCGGCTATAAGATTTCATCCTGGAAAAAGTTTCCTAGTCATATTGAGAAAAAGAGTGAATATAAAGGTCAGGATGCCGAAGATTTGCCGTCGAAGGAAGAACAGGATCAGGTTCATGTCAAAGAAGAAAATGTCGAAAACGTGGATACTGATTCATCCAATCCTGAACAGTCAGAACTATCCTCCAGAGCTCAAAAGGTACACTGGGGATTCTGGGGAGATCCCCACAATCTAACATATGAGAACTCAATGATCTGCAGAATATGTGAGGTTGAAATACCAATTGTGTATGTGGAGGAGCACTCTCAAATATGCACTATTGCCGATAGATGTGATTTAAAAGGTCTTAACGTGAATGAACGGCTTGAAAGATTTGCCGAAACTATTGAAAAGATAATCGAATCATGGACACCAAGAAGCACACCTAAAAGCACCCCAAAAAGTACCCCAAAAAGTACCGACGGTCCTGGAGAAAGCTTTGAGAATGCGAGAGTATCTACTTCAAGTTTGCATGATGAGTTCAATGATTTATCTCTCGTGAGAAACAGCTTATCTCGTCGAGGCTCAGAAGACATGCTTGATTCTGTTCCCGAAGCTGACAATACTTTTATTAAGGATGATCTGAACCTTTTGCCAAAAGTGTCATGTGAAAAATATTTCAAACACGATCAATGCTCAAAGATGTCTTCAGTCGGAAGCTTGACACCCAGATCACCATTATTAACCCCACGAACAAGTCAGATAGAAATGTTATTAAGTGGGCGAAGAACAATATTGGAACTAGAGAGTTATTTCCAGATTAACAAACTAGTGGAAATTGCTCGTTCTGTTGCAAATGTGAATGACTACAGATCTTTGAACTATGTAAGTCGTCGCGTAGAAGAACTTAATCTCACCATTCAGGACAGAAAGGTCGATGCTCTCATTGTTGAAACTTTTGGGCGACGCATAGAGACTCTCTTGTCGGAAAAATATTTATCTCTTTGCGATCAACTAGACAACGAAAAGGTAGACTCATCGAATGGCTTGGTTGAAGAAGAGAGTTCAGTGGAAGATGATACTATTCGAAGCCTTCGTGCTAGCCCAATTCACCATTGTTCTAGGGATCGAACCTCCATCGAAGACTTCGAAATAATAAAACCAATAAGCCGAGGTGCATTCGGACGAGTTTTCCTAGCCAGGAAAAGAGCAACCGGAGATTTGTTTGCCATAAAGGTTCTGAAAAAGGCTGATATGATCCGCAAAAATGCAGTTGAAAGTATTTTGGCTGAGCGAGACATCCTTATATCAGTTCGAAATCCCTTTGTGGTTCGATTTTTCTACTCTTTCACTTGTAGGGAAAATCTTTATTTGGTTATGGAATTTTTAAATGGTGGAGACCTTTACTCTCTATTGAGAAATCTAGGTTGTTTAGATGAAGATATGGCACGTGTATATATTGCCGAAGTTGTGCTTGCATTGGAGTATTTACATTCCTTACATGTAATTCATAGAGACTTGAAGCCTGATAACTTGTTGATTGGCCAAGATGGTCACATCAAGTTGACAGATTTTGGGCTCTCCAAGGTTGGTCTTATTCACAGCACGGATGACTTATCAACTTCATCATTTTCTACTGATGATCTTGTAGGAAATGATGAACCAAAAAAAGATCGTTCTTCAAAAGTCGAACAACGTCAAAAGCAGTCAGTTGTTGGCACCCCAGATTATTTGGCACCTGAAATACTTCTCGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCTGTGGGTATCATCCTTTATGAGCTCCTTGTGGGTATTCCACCATTTAATGCAGAACATCCGCACCAAATTTTTGACAAAATAATTAACAGAGACATACAGTGGCCAAATGTACCTGAGGAGATGAGCTATGAAGCATGTGATTTGATTGACAAATTACTCGCAGAAAATCCGGTCCAAAGATTGGGAGCAACAGGAGCTGGTGAG 3162 0.4288 MSSNSLPPSHLSNTSPTNPTGYDSTSKISSPASSRAKLQKSPPIPNRWTAIEDEGEQRNEEAVRKLEQERTEEANPTILLASSLGLNHIRTRSASSPLRFPSLAGASPSSSKDCIGTEDRIVVSTDLGKRIYGTQSKLSRAPSHAVPLTQGNDDIFAKELQSPRVQAILRVTSGRKKKPIDFKSYSHELNSRGVKAFPVWKHRVFGHIEEVEVAIRTKFGKLKEEVDSDLSAFAGDLVGLLEKTLGSHPECRESLEDLLIVAQQCAMMSPSEFWMNCEAIVQNLDDRRQELPMGILKQAHTRLLFILTRCTRLVQFNKENGYEQDHILGLHQLSDLGIYREQILHAVEHKSIGGNEMAEEQRTKSAVKEPDSQITQIQTDRNVNTATDTSRSGDSTGSGYKISSWKKFPSHIEKKSEYKGQDAEDLPSKEEQDQVHVKEENVENVDTDSSNPEQSELSSRAQKVHWGFWGDPHNLTYENSMICRICEVEIPIVYVEEHSQICTIADRCDLKGLNVNERLERFAETIEKIIESWTPRSTPKSTPKSTPKSTDGPGESFENARVSTSSLHDEFNDLSLVRNSLSRRGSEDMLDSVPEADNTFIKDDLNLLPKVSCEKYFKHDQCSKMSSVGSLTPRSPLLTPRTSQIEMLLSGRRTILELESYFQINKLVEIARSVANVNDYRSLNYVSRRVEELNLTIQDRKVDALIVETFGRRIETLLSEKYLSLCDQLDNEKVDSSNGLVEEESSVEDDTIRSLRASPIHHCSRDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEFLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLHVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLIHSTDDLSTSSFSTDDLVGNDEPKKDRSSKVEQRQKQSVVGTPDYLAPEILLGMGHGATADWWSVGIILYELLVGIPPFNAEHPHQIFDKIINRDIQWPNVPEEMSYEACDLIDKLLAENPVQRLGATGAGE 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2220g0001 1054 SUPERFAMILY Protein kinase-like (PK-like) 770 1049 IPR011009 -
Prci2220g0001 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Prci2220g0001 1054 ProSiteProfiles Protein kinase domain profile. 773 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 354 400 - -
Prci2220g0001 1054 Gene3D Phosphorylase Kinase; domain 1 771 856 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 533 564 - -
Prci2220g0001 1054 Pfam Protein kinase domain 773 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 414 459 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 51 72 - -
Prci2220g0001 1054 SMART serkin_6 773 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 940 955 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 1 74 - -
Prci2220g0001 1054 CDD STKc_MAST_like 779 1054 - -
Prci2220g0001 1054 FunFam probable serine/threonine protein kinase IREH1 771 860 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 932 961 - -
Prci2220g0001 1054 FunFam Probable serine/threonine-protein kinase cot-1 856 1054 - -
Prci2220g0001 1054 Coils Coil 52 72 - -
Prci2220g0001 1054 PANTHER SERINE/THREONINE-PROTEIN KINASE 460 1054 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 414 445 - -
Prci2220g0001 1054 Gene3D Transferase(Phosphotransferase) domain 1 857 1050 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 368 400 - -
Prci2220g0001 1054 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2220g0001 38 1054 AGC Kinase Gene Family AT5G62310 59.449 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Prci2220g0001 Pkinase 2.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2220g0001 - - pcin:129301583 2035