LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci217g0003	ATGTGTGACAAAGAGAGTTTTGAGATAGATGGAAACGAGGATCACATGAGTTATTCATCTAGTATGCCCTCGGATTGGAGATTTGTGGTTCCTAATCTTGCAAACACATCAGTGGGTTTGGTGGATTCATATGTTCCGAGCTTCTGGGATCATCCCATCAGTTCCCAAAACTTAGGGTCATGTGACATCAATGTACAGAACAATGTTAGCTCCTCATGCACAACTGGAAATAGAAAAGATGGCCTCGCCTTAGCTACTCATGATAGAACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTGAAAATGGATGCTTTCTTACCAAACAGACCAACAACAATCTTCCCACAGAGTTTGTCTCAGACTCCCACTGATTCTTCCTTTATTGAGCGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGAAATTTTGGCAGTATGGTGAACTCATTTGGGATTCCTCATTCGACGGGTCTGTATTCTGGACGGGATGCTCTTGCAGGCCATGGGTTAAAATCAGCACATGGAGCACTATCTCAAGAAAGTTATCTGGATGTTGGTGAAGCTGCAAAAGATGTGTCTCCATCTGTTCAAAATTTGGCTGCTAAAGGAAGTCCACTCAAGAATCACAAGAGAAGTGAAAGCCTAGTAACTTCTCACGATGAAGCAAAACAAGCTATTGGCAGGTCAACTGATGAGTCTGATAGAGCAGAATCAAGTGGTGATGGTGGTAGTGGTGGTCAAAATGATGTGCAGATGTTGGAGGGTACTAGCGGAGAACCTTCTAACAAAGGACTAAACGCAAAGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGGAAAAGCCAATGGAGGTTCTGAGCCGCCAAGCGAGGCTGCGATGGACAACCCTGAGGGCCAACAGAAGGGAGACCAGCAACCAACTTCAACAGCCAAGACTTCTGGGAAGGATACCAAACAGGGCTCTCAAGCTTCTGACCCACCAAAGGAGGAATACATACATGTCAGGGCTCGCAGGGGTCAAGCAACGAATAGCCATAGCCTTGCTGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTGACAGGCAAGGCGGTTATGCTAGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACCGTAAATTCACGGCTGGATTTTAATCTTGAAGGACTTGTTGCTAAAGATATGCTTCAGCAACGGCCTGGCCCCTCATCAGCATTGAGGTTTTCTCCAGAAATGCCAATGGTTTTTCCTCCTTTACATCTGTCTCAACCAGGCCTTCTACCGTCAAATCTTCCTTGCATAGCGAACTCATCTGATATACTTCGAAGAACCATTCATCCACAGCTAACTCCCTTGGTTGGAGGATTCAAGGATCCTAATCAGCTACCTGAGATGTGGGAGGATGAACTGCACAATGTTGTACAGATGAGCCATGCACAAACTGCTCCACCGAGTAGTCAAGAGGAAGATGGTAATGCAGCAGCAGGTGAGATGAAAGTTGAACTATGA	1599	0.4472	MCDKESFEIDGNEDHMSYSSSMPSDWRFVVPNLANTSVGLVDSYVPSFWDHPISSQNLGSCDINVQNNVSSSCTTGNRKDGLALATHDRTLEMGWNPTSSILKMDAFLPNRPTTIFPQSLSQTPTDSSFIERAARFSCFSQFNGGNFGSMVNSFGIPHSTGLYSGRDALAGHGLKSAHGALSQESYLDVGEAAKDVSPSVQNLAAKGSPLKNHKRSESLVTSHDEAKQAIGRSTDESDRAESSGDGGSGGQNDVQMLEGTSGEPSNKGLNAKKRKRSGQDSDNGKANGGSEPPSEAAMDNPEGQQKGDQQPTSTAKTSGKDTKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNLEGLVAKDMLQQRPGPSSALRFSPEMPMVFPPLHLSQPGLLPSNLPCIANSSDILRRTIHPQLTPLVGGFKDPNQLPEMWEDELHNVVQMSHAQTAPPSSQEEDGNAAAGEMKVEL	532

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci217g0003	532	Pfam	Helix-loop-helix DNA-binding domain	348	396	IPR011598	GO:0046983
	Prci217g0003	532	CDD	bHLH_AtBPE_like	335	420	-	-
	Prci217g0003	532	MobiDBLite	consensus disorder prediction	244	267	-	-
	Prci217g0003	532	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	343	414	IPR036638	GO:0046983
	Prci217g0003	532	MobiDBLite	consensus disorder prediction	303	326	-	-
	Prci217g0003	532	MobiDBLite	consensus disorder prediction	204	333	-	-
	Prci217g0003	532	MobiDBLite	consensus disorder prediction	1	21	-	-
	Prci217g0003	532	SMART	finulus	351	401	IPR011598	GO:0046983
	Prci217g0003	532	MobiDBLite	consensus disorder prediction	210	242	-	-
	Prci217g0003	532	Gene3D	-	342	417	IPR036638	GO:0046983

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci217g0003	40	509	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G68920	46.025	7.54e-109	332

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Prci217g0003		HLH	6.8e-06	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci217g0003	-		-	gmx:100797720	683.715

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