Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2161g0002 ATGATGCCTCCTGAGCAAGAAACCACGACCGTACATGTGACGCCGTCCAGCATTCCGTCCATCCCCAACCGGCCACTGCCGGAGAAAAGCTCCGTTCACGCTGATCCAGGAGGTTCCGCCACTAACGACGACAAACCCAGTTCGGATAAATATGGCATTCCCCTTCATCAGCACCACCCGTCGTCAGCAACACGTTCCATAGTTCTTCACCAATCATTGCGACCCGTTACCCTCAAATTTGAAGACGTTTCTTACAGTATGACCTTTGGAAGCAAAAAGAATGGAGGTTGTTTTTCTTCGGATAACTCGAAACCGACCCGGACAATTCTCAACGGCGTGACTGGGACGGTCCGGCCTGGAGAATTGATGGCAATGCTGGGCCCGTCAGGCAGCGGCAAGACCACGCTACTCACAGCACTAGCTGGCCGGCTCGCCGGAAAAGTTTCCGGCAACATAACCTACAATGGCCTTCCTTTCTCTAGCTCCATGAAGCGCAGGACTGGTTTTGTCTCACAAGACGATGTGTTATACCCTCACCTCACTGTTCTTGAGTCGCTGGTTTATACGGCTTTGTTGAGACTTCCCAAAAGCCTCACCAAAGAAGAGAAAATAGAACAAGCTGAGATGGTTATCACGGAGCTTGGGTTAACCAGGTGCCGAAACACCGCCGTGGGTGGTGTTTCCGCCTTGTTTAGGGGAATCTCGGGTGGGGAGAGAAAACGGGTTAGTATTGGGCAGGAGATGCTTGTGAACCCGAGTCTGTTGTTGCTGGACGAACCCACCTCCGGGCTGGACTCGACGGCCGCTCAACGCATAGTGGCAGTGCTCCGGGGGATGGCACGGCGTGGCCGGACGGTGGTGACCACTATTCATCAGCCGTCAAGCAGGTTGTACACGATGTTTGACAAGGTCGTCGTACTATCCGACGGTTGCCCCATTTACGCAGGAGTATCGGGCCGGGTCATGGAGTATCTCGAGTCCATCGGGTTTCTGCCCACTATCAACTTCATGAACCCGGCTGATTTTCTGCTTGACCTTGCTAATGGCATTGTGGCTGATGTTAAGCTGGATGATCAGACTGACATGCAGGGCAGATTAGATCACATTGAAGATCAGTCTTCAATAAAACAGTCTCTGGTTTTATCCTATAAAAAGATTTTATATCCTGCTCTGAAAGAAGAGATTCAGCAAAATATTAGAGACACAGCTAGTTCAACACCAGGAACACCCGGACGAAGCTTAGAGAACCAGTGGAACACCAGCTGGTGGGAGCAATTCAAAGTTCTGCTTAAGAGGGGTTTACAAGAGAGGAGACATGAATCCTATTCAGGCTTAAGGATTTTCCAAGTCTTGTCTGTCTCAATTCTCTCAGGACTTCTCTGGTGGCATTCTGATCCTTCACACATACAAGATCAGGTAATATGA 1425 0.5039 MMPPEQETTTVHVTPSSIPSIPNRPLPEKSSVHADPGGSATNDDKPSSDKYGIPLHQHHPSSATRSIVLHQSLRPVTLKFEDVSYSMTFGSKKNGGCFSSDNSKPTRTILNGVTGTVRPGELMAMLGPSGSGKTTLLTALAGRLAGKVSGNITYNGLPFSSSMKRRTGFVSQDDVLYPHLTVLESLVYTALLRLPKSLTKEEKIEQAEMVITELGLTRCRNTAVGGVSALFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTAAQRIVAVLRGMARRGRTVVTTIHQPSSRLYTMFDKVVVLSDGCPIYAGVSGRVMEYLESIGFLPTINFMNPADFLLDLANGIVADVKLDDQTDMQGRLDHIEDQSSIKQSLVLSYKKILYPALKEEIQQNIRDTASSTPGTPGRSLENQWNTSWWEQFKVLLKRGLQERRHESYSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2161g0002 474 CDD ABCG_EPDR 75 316 - -
Prci2161g0002 474 Gene3D - 83 328 IPR027417 -
Prci2161g0002 474 MobiDBLite consensus disorder prediction 1 65 - -
Prci2161g0002 474 Pfam ABC-2 type transporter 291 355 IPR043926 GO:0140359
Prci2161g0002 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 326 IPR027417 -
Prci2161g0002 474 ProSitePatterns ABC transporters family signature. 234 248 IPR017871 GO:0005524|GO:0016887
Prci2161g0002 474 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 57 473 - -
Prci2161g0002 474 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 334 IPR003439 GO:0005524
Prci2161g0002 474 FunFam ABC transporter G family member 22 97 328 - -
Prci2161g0002 474 SMART AAA_5 119 311 IPR003593 GO:0016887
Prci2161g0002 474 Pfam ABC transporter 110 262 IPR003439 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2161g0002 103 310 Calmodulin-binding Proteins AT2G36910 32.420 3.91e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2161g0002 K05681 - gmx:100797574 658.677