Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2142g0003 ATGATGAATACTGCAAGAAATAGGCCTCCTTTCACAGCTTCTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTCAAATACATGGTCTCAGGGACACCGATCCCACCTGATCTCATTTACTCCATCAAAAGAAGCCTAGACTCTTCAATATCTTCAAGGCTTTTTACTCACCATCCGGGTGTGGGATGGGGGTGTTTTGAGATGGGTTTTGGGAGAAAAATTGATCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAGAAGTGGAGATGCTCTAAGGAAGCATATCCAGATTCAAAATACTGTGAAAAACACATGCACAGAGGAAGAAACCGTTCAAGAAAGCCTGTGGAAGTTCCTTCATCAACAAGCAGCATTACCACAAACACCTCGCAAGCAATCTCACCATATAGCCTTAACAGAGGTCTTTCCATGATGAGCAGCAACCCCAATAACAACGCCACATCCTCAATCTCTTCTTCCTCTTTCCCATTCTCCGAATCATCATCCCAATATCCTTACCAAAATTCTTCTCTTAATCCCTTCTTTTACACCCATTCAACCTCTTCGAGACCTCCTGATTCTGATTTCTCATCTCAAAACAACACTACCCATCAGCTATTTTTGGACTCTGGATCTTATTCTCATGATGAAAAAGACTATAGAAATATTCATGTGGACGAAAGGGCATTTTTCCCAGAAGCTTCAGGGTCTGCAAGAAGCTTCCACGACTCATACCACGAATTATCTATGAGCTCCTACAATAAATCCTATTCAAGCTCGCAGCAGTTTCAAAGCCTCAGTGATAATGACAGTAATCCAAGGCAACAAGAAGAGCAACATTGTTTTGTTCTAGGAACCGACTTCAAATCACCAAGACCAAGCAAAAGTGAGAAAGAGACTAGCACTGAAACTGCCCAGAGACCACTTCACCACTTCTTTGGGGATCAGTGGACTCAAAAGAACACAGATTCTTGGCTCGATCTCGCTTCCAACTCCAGAATCCCCACAGATGAATGA 1023 0.4291 MMNTARNRPPFTASQWQELEQQALVFKYMVSGTPIPPDLIYSIKRSLDSSISSRLFTHHPGVGWGCFEMGFGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGRNRSRKPVEVPSSTSSITTNTSQAISPYSLNRGLSMMSSNPNNNATSSISSSSFPFSESSSQYPYQNSSLNPFFYTHSTSSRPPDSDFSSQNNTTHQLFLDSGSYSHDEKDYRNIHVDERAFFPEASGSARSFHDSYHELSMSSYNKSYSSSQQFQSLSDNDSNPRQQEEQHCFVLGTDFKSPRPSKSEKETSTETAQRPLHHFFGDQWTQKNTDSWLDLASNSRIPTDE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2142g0003 340 Pfam QLQ 10 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci2142g0003 340 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci2142g0003 340 MobiDBLite consensus disorder prediction 117 163 - -
Prci2142g0003 340 MobiDBLite consensus disorder prediction 286 315 - -
Prci2142g0003 340 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci2142g0003 340 PANTHER GROWTH-REGULATING FACTOR 5 9 326 IPR031137 GO:0005634|GO:0006351|GO:0032502
Prci2142g0003 340 MobiDBLite consensus disorder prediction 185 204 - -
Prci2142g0003 340 MobiDBLite consensus disorder prediction 103 163 - -
Prci2142g0003 340 Pfam WRC 77 119 IPR014977 -
Prci2142g0003 340 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Prci2142g0003 340 MobiDBLite consensus disorder prediction 293 307 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2142g0003 8 321 GRF Transcription Factor Family AT3G13960 39.410 5.71e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Prci2142g0003 WRC 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2142g0003 - - gmx:100806024 443.351