Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci20g0004 ATGATCATCATGTTTCTTACAGGATTTGGTTCAAGTTCTTGCTCGCTACTCCTCTTTTTTATGTATTTGTTCTCTTTTTCCGTTCTGGTTTGTGCCTTGGACACCGTCCCACCATCTCTAGAGATCCATGAACCCCAAACAATAAGGTCAAATAATAGCATGTTTACTCTAGGATTCTTTAGTCCTGAGAATTCCACGAATCGCTACTTAGGAATCTGGCTTATGTCTGAATCAACTATTGTTTGGGTGGCAAACAGAGACGACCCAGTTACAGATTCTTCTGGGATTCTTACAATATCGGAGAATGGCAATCTTGTTGTTTTGAATGGGCAAAAACAAGTTGTCTGGTCAACAAATGTCTCACATATTGCATCAAATTCCAGTGTTCAACTCTTGGATTCCGGCAACCTTGTCCTCACTGATAGGACTACCGGAGCAATGGTGTGGCAGAGTTTCCAACATCCCTGTGATACATTATTACAAGACATAAAACTCAGTACTAATCAACAAACAGGCGAGAAAGTGAAACTTACATCATGGAAAAGTACATCTGATCCATCCCGTGGAAGATTTTCTTTAGGTCTAGAGCATCTTAATTTTACTCAAGTGTTCATTTGGAAAGAAAATCGTCCTCACTTTCGTAGTGGTCCTTGGAATGGTACAAACTTTCTTGGGGTACCTGGGACGTCATCTATGATTGGAGATGGCTTCCAAGTGAAAGAAGATGAAGGAATTTTTGAAATTTCTTTTCATTTCATAGAAAAGTCTCTGTTGATAACTTACGATTTAGATTCTCAAGGAAAAGTGTCAGAACAGAGTTGGGATTTCCAGAAAAATGCATGGGAATTGCGGTGGAGAATTGGGGATTCTGAGTGTGATTTTTATGGAAAATGTGGTCCATTTGGGATCTGCAATTCACAGAGCTCCCCAATCTGTAGCTGCTTGAGAGGGTTTGAACCTAAGAACAAAGAAGAATGGGAAAAGCAGAACTGGACCAGTGGATGCGTGAGAAGGGAAGCACTTCAGTGTGTGAAAAACAATAATGGCTCTCAAGCTACTAGCACAACAGATGGGTTTTTCAAGCTGGAGAGGGTGAAAGTACCAGATCAAGCAGAGTCATTACCATATAACTTCAGAGATGTTGTTGATTGTCGAACTCCATGTCTGAAGAGTTGCTCTTGTAAAGCTTATGCATATGACCCAGGCCTTGGCTGTATGGTTTGGAGTGTAGATTTACTTGACATCTTGAGCAATTCACCTGGAGGAGTGGATCTTTACTTACGTTTAGCCTCCTCAGAACTTGATACAGTTGGGAGGAGTAACATGACAGCACCAATTGTAATATCAATTCTGACAGGAACAGTTGTCATTATTGCCTCTGGATTTTTCCTATGGAAAAAATGGTCAAAGCAAAAAGGGGGAGTACATAAGCAAATTGTTGACGAAAGAAGGAATACAAAACTGAAGCAAGCCAAAATTCAAGAGTTATCTTTGTTTGATTTTAGAAAGTTGGCTACTGCAACAAACAACTTTGACTTGGCAAATAAAATCGGGCAGGGTGGTTTTGGCCCAGTTTACAAGGGAAAGTTGGAAGCTGGACAAGAAATAGCAGTAAAAAGATTGTCAAGATCATCTGGACAGGGTGTGGAAGAATTTATCAATGAAGTGGAATTGATTTCTAAACTTCAACACCGAAACCTTGTTAGACTTCTTGGCTGTTGCATTGAAGAAGAAGAGATATTAGTTTACGAATACTTGCCAAACAAGAGTTTAGATGCTTATATCTTTGATCCACTGCAACAAAAGCATTTAGATTGGGGGAAGCGCTTCAACATAATAGAAGGAATAGCTAGAGGATTACTTTATCTTCATAGAGATTCAAGATTAAGAATTATACATAGAGATGTAAAAGCTAGTAATATATTGTTAGATGGAGAGATGAATGCAAAGATATCAGATTTTGGGATGGCTAAACTTTTTGGAGGTGATCAAGATCAAGCTAATACAAAAAGAGTTGTTGGAACATTTGGCTACATTTCTCCCGAATACGCAACTGAAGGATTCTATTCAGAGAAATCTGATGTTTTTAGCTTTGGTGTTTTGCTACTAGAAATTATTAGTGGAAGAAAAAACACAAGTTTTTATGAAGATGCAGAATGTTTGACACTTTTAGGATTTGCGTGGAAATTATGGATGGATGCCAATGTTATACCTCTAATAGATCCACAAATTTATGATCCAAGCTTTCAGAACGATATATTGAGGTGTATTCATATAGGTCTTTTGTGTGTGCAAGAACTTGCAAAGGACAGGCCCATTATGGCATTTGTAATGTCAATGCTTCAAAGTGAGATTATAGATATTCCTCCACCAAGACAACCTGCATTCATCTTCAGGCAAACAATGTCTTGTGCAGCAAAGAAAGCTCTAGAAAATAATGAGTCATGTTCCATCAATATTGTAACTGTCTCACATTTTGAGGGGAGATAG 2490 0.3855 MIIMFLTGFGSSSCSLLLFFMYLFSFSVLVCALDTVPPSLEIHEPQTIRSNNSMFTLGFFSPENSTNRYLGIWLMSESTIVWVANRDDPVTDSSGILTISENGNLVVLNGQKQVVWSTNVSHIASNSSVQLLDSGNLVLTDRTTGAMVWQSFQHPCDTLLQDIKLSTNQQTGEKVKLTSWKSTSDPSRGRFSLGLEHLNFTQVFIWKENRPHFRSGPWNGTNFLGVPGTSSMIGDGFQVKEDEGIFEISFHFIEKSLLITYDLDSQGKVSEQSWDFQKNAWELRWRIGDSECDFYGKCGPFGICNSQSSPICSCLRGFEPKNKEEWEKQNWTSGCVRREALQCVKNNNGSQATSTTDGFFKLERVKVPDQAESLPYNFRDVVDCRTPCLKSCSCKAYAYDPGLGCMVWSVDLLDILSNSPGGVDLYLRLASSELDTVGRSNMTAPIVISILTGTVVIIASGFFLWKKWSKQKGGVHKQIVDERRNTKLKQAKIQELSLFDFRKLATATNNFDLANKIGQGGFGPVYKGKLEAGQEIAVKRLSRSSGQGVEEFINEVELISKLQHRNLVRLLGCCIEEEEILVYEYLPNKSLDAYIFDPLQQKHLDWGKRFNIIEGIARGLLYLHRDSRLRIIHRDVKASNILLDGEMNAKISDFGMAKLFGGDQDQANTKRVVGTFGYISPEYATEGFYSEKSDVFSFGVLLLEIISGRKNTSFYEDAECLTLLGFAWKLWMDANVIPLIDPQIYDPSFQNDILRCIHIGLLCVQELAKDRPIMAFVMSMLQSEIIDIPPPRQPAFIFRQTMSCAAKKALENNESCSINIVTVSHFEGR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci20g0004 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Prci20g0004 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 220 IPR036426 -
Prci20g0004 829 ProSiteProfiles Protein kinase domain profile. 511 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci20g0004 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 152 - -
Prci20g0004 829 SUPERFAMILY Protein kinase-like (PK-like) 491 781 IPR011009 -
Prci20g0004 829 Pfam Protein tyrosine and serine/threonine kinase 513 719 IPR001245 GO:0004672|GO:0006468
Prci20g0004 829 CDD EGF_CA 291 322 - -
Prci20g0004 829 ProSiteProfiles Bulb-type lectin domain profile. 33 152 IPR001480 -
Prci20g0004 829 PIRSF SRK 8 829 IPR024171 GO:0004674
Prci20g0004 829 SMART ntp_6 354 429 IPR003609 -
Prci20g0004 829 Pfam D-mannose binding lectin 79 181 IPR001480 -
Prci20g0004 829 SMART blect_4 39 155 IPR001480 -
Prci20g0004 829 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544
Prci20g0004 829 CDD STKc_IRAK 517 782 - -
Prci20g0004 829 ProSiteProfiles PAN/Apple domain profile. 343 430 IPR003609 -
Prci20g0004 829 Gene3D Transferase(Phosphotransferase) domain 1 586 787 - -
Prci20g0004 829 Gene3D - 28 153 IPR036426 -
Prci20g0004 829 Pfam PAN-like domain 353 415 IPR003609 -
Prci20g0004 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 772 - -
Prci20g0004 829 CDD B_lectin 46 155 IPR001480 -
Prci20g0004 829 SMART serkin_6 511 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci20g0004 829 Gene3D Phosphorylase Kinase; domain 1 472 585 - -
Prci20g0004 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Prci20g0004 829 CDD PAN_AP_plant 341 430 - -
Prci20g0004 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 585 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci20g0004 442 796 Receptor kinase-like Gene Family AT4G23230 52.809 2.52e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci20g0004 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci20g0004 - - qsa:O6P43_012541 947.577