Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2096g0001 GTACATTATATAACAGCCTTATCAGTGGAGTTGGGCGGAATATTGGAAAATATTTTTGATGGTATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGTGATGTTTATATTCCTCGTGGTGTCTCTGTTCCAGCGCTTGATAAAGATACACTTTGGGAGTTTCAGCCTAAAAAAATTGGTGAATGGGACCTTTTGACTGGTGGAGATTTATACGCTACGGTTTTTGAGAACAGTTTAATGCAACACCACGTTGCACTTCCTCCTGATGCAATGGGAAAAATAACATACATTGCCCCACCTGGTCAATATTCCCTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAACAGTTCACAATGCTTCAGACATGGCCTGTGCGAACTCCGAGGCCTGTTGCATCAAAACTAGCAGCTGACACTCCTCTGCTTACGGGTCAGCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTTGGCGGGACTTGTGCAATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCTCTTTCAAAGTATTCCAACTCTGATGCTGTTGTTTATGTTGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGTCTTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGCCGAGAAGAATCTGTTATGAAGCGAACAACGCTGGTGGCTAACACTTCAAACATGCCTGTGGCTGCTCGTGAGGCTTCAATTTATACAGGAATCACTCTAGCTGAGTACTTTAGAGATATGGGCTACAATGTCAGCATGATGGCAGATTCAACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTTGCTGCACGTTTAGCTTCTTTCTATGAACGTGCTGGCAAAGTAAAATGCCTTGGAGGTCCCGAACGTACTGGTAGCATCACAATTGTTGGTGCTGTTTCTCCACCTGGAGGAGATTTCTCTGATCCTGTGACATCTGCAACCCTTAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCCCAAAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCCTATTCAAAGTACTCGGGTGCATTGGAATCCTTCTATGAGCAATTTGATCCAGATTTCATAAACATTAGGACAAAGGCTCGTGAAGTGCTGCAGAGAGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGCAAGGACGCTTTAGCTGAAGGAGATAAGATCACATTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAGAATGCTTTTACTCCATATGACAAATTCTGTCCCTTCTATAAATCTGTTTGGATGATGCGCAACATTATCCATTTCTACAACTTGGCAAATCAGGCAGTGGAGAGGGGAGCTGGTACAGATGGTCAGAAGATCACATACACCCTCATTAAGCATCGTTTGGGAGATCTCTTCTACCGTTTAGTGTCGCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCAGCTCTGGTTGGCAAATTTAAGAAGCTTCATGAGGACCTGACTAACGGTTTCCGCAATCTTGAGGATGAAATCCGATAG 1623 0.4368 VHYITALSVELGGILENIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEWDLLTGGDLYATVFENSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSITIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSGALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALVGKFKKLHEDLTNGFRNLEDEIR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2096g0001 540 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 149 375 IPR000194 GO:0005524
Prci2096g0001 540 CDD ATP-synt_V_A-type_alpha_C 392 498 - -
Prci2096g0001 540 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 6 538 IPR022878 GO:0046034|GO:0046961
Prci2096g0001 540 Gene3D - 51 122 - -
Prci2096g0001 540 Pfam ATPsynthase alpha/beta subunit N-term extension 19 140 IPR031686 -
Prci2096g0001 540 NCBIfam V-type ATPase subunit A 6 528 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Prci2096g0001 540 CDD V_A-ATPase_A 7 377 - -
Prci2096g0001 540 FunFam V-type proton ATPase catalytic subunit A 110 374 - -
Prci2096g0001 540 Gene3D - 376 525 IPR024034 -
Prci2096g0001 540 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 388 471 - -
Prci2096g0001 540 Gene3D - 9 374 IPR027417 -
Prci2096g0001 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 380 IPR027417 -
Prci2096g0001 540 FunFam V-type proton ATPase catalytic subunit A 376 529 - -
Prci2096g0001 540 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
Prci2096g0001 540 FunFam V-type proton ATPase catalytic subunit A 51 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2096g0001 7 540 Primary Pumps ATPases(2) AT1G78900 93.271 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2096g0001 K02145 - gmx:100775727 1040.02