Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2043g0001 ATGGGGCCCATCAGTTATCCTCCGCGCTCGCAGTACCAGAAGTTCATCATTCCTCATGAAAACCTCCCATCGTCATCATCACCATCATCATCGTCATCTTCTTCTTCTTCTTGGCCAAACCAAGTAACAGAGCATGTGAAATCTTCAAATAGAGCAGTTGAATCCTTGCAAGTCATTTGTGAAATCTGCACAGAAATTAAACGAACTACCGAGATGATCAAGAGCCAAACATGCCACCATTCGTTTTGCTCTGATTGTGTGACAAAACATGTGGCCACAAAAATCCAAGACAGCATAACATCAGTTCCGTGTCCTGGTTTGGATTGTAAGAGTGTTTTTGAGATGGAAGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAACTCCCAACAATTTATTGCCCCTTTAAGGATTGTTCAGTTATGTTGCTGGTTGAGAATGAGGAAGATCAACAAGCTGCAAAGGAAACAGATTGCCCTGTTTGCCACAGATTGTTCTGTCCAAGATGTAATGTACCATGGCATCATGGAGTCGATTGTGAGGAATACCAGAAACTGAATGAGAATGAGAGAGGAAGTGAAGATTTGCTTGTGAGACAGCTTGCTAAAGAGAATCAATGGAGAAGGTGTCCTAAGTGTAAGTTCTATGTGGAGAAGACAACTGGATGCTTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTATGCATGTGGAGAAGAATGGACAAACACTCATGGAGGCTGCCAAGGAAAGTAG 798 0.4348 MGPISYPPRSQYQKFIIPHENLPSSSSPSSSSSSSSSWPNQVTEHVKSSNRAVESLQVICEICTEIKRTTEMIKSQTCHHSFCSDCVTKHVATKIQDSITSVPCPGLDCKSVFEMEACRPWLPKDLLERWDQALCEALFLQLPTIYCPFKDCSVMLLVENEEDQQAAKETDCPVCHRLFCPRCNVPWHHGVDCEEYQKLNENERGSEDLLVRQLAKENQWRRCPKCKFYVEKTTGCLHITCRCKYEFCYACGEEWTNTHGGCQGK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2043g0001 265 ProSiteProfiles TRIAD supradomain profile. 56 265 IPR044066 -
Prci2043g0001 265 SMART ibrneu5 128 193 IPR002867 GO:0008270
Prci2043g0001 265 SMART ibrneu5 203 262 IPR002867 GO:0008270
Prci2043g0001 265 CDD BRcat_RBR_unk 145 196 - -
Prci2043g0001 265 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 255 IPR031127 GO:0004842|GO:0016567
Prci2043g0001 265 SUPERFAMILY RING/U-box 58 137 - -
Prci2043g0001 265 MobiDBLite consensus disorder prediction 17 43 - -
Prci2043g0001 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 138 IPR013083 -
Prci2043g0001 265 Pfam IBR domain, a half RING-finger domain 131 193 IPR002867 GO:0008270
Prci2043g0001 265 Pfam IBR domain, a half RING-finger domain 211 262 IPR002867 GO:0008270
Prci2043g0001 265 Pfam Zinc finger, C3HC4 type (RING finger) 60 105 IPR018957 GO:0046872
Prci2043g0001 265 FunFam RBR-type E3 ubiquitin transferase 195 265 - -
Prci2043g0001 265 FunFam RBR-type E3 ubiquitin transferase 55 141 - -
Prci2043g0001 265 CDD Rcat_RBR_unk 219 255 - -
Prci2043g0001 265 Gene3D - 190 264 - -
Prci2043g0001 265 ProSiteProfiles Zinc finger RING-type profile. 60 105 IPR001841 -
Prci2043g0001 265 SUPERFAMILY RING/U-box 133 198 - -
Prci2043g0001 265 SUPERFAMILY RING/U-box 204 262 - -
Prci2043g0001 265 ProSitePatterns Zinc finger RING-type signature. 78 87 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2043g0001 60 252 C3H Transcription Factor Family AT2G19610 28.218 1.25e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2043g0001 K11975 - qsa:O6P43_027978 332.798