Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci203g0002 ATGGTCTCACCTGATCGGATGTGGCAACTTCCAAGTGAATTGGATGCTTCATCAAATCATGAGGCTCATTGCCCTAAACGTCAAAGCACATGTGAACTGGAGGGCGATGCTTCTGTAGATGATATTCTTAATCAGCAGTTTAAAATGTATTCGTCCCTCTCACAAACCCGATCAGATGTGCAAAAGGTTCAGTCTCTTGTACCAATTTGGAAGGAGCAGCAAGAAAGGACTGGCATTTATGAGGATACTATAACTCGTGATACTGGGAAGCCACTGCCAGAAGTTGTTATGAGAAGTCTTTCTGGTGGTCTTGACTTTGAGAAAAAATTTGTTGAAATGTGCTGTGAAGCTGAAACCTGTGCATCTTTTATTTCATCTGAAGAGTCGAGAGAAACAGACATAATAGGTTCAGCATCGCCACCAGCTTCACTATGCAAAGATGCCAAATTGCATGAAGAAGGGACTGAGGCAAATCTCAGATTGTTGACTGTTGATGAAATGCAATCATCTGAGATTATTGGAACACAGGGCAAAAAGGCTGCAGATAAGGAAGCATTGAATCTCCTAAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATTAACTCTGATGATGAACTTATTCGTGAAACCATTTTGAGTCCCTTGTTACCTGCTACAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGATTACGAAAGTGAGTCCCAAAAGGAGTGTCAAGATATTCTTGATTCCATTGACGATCAACTTCAGCTGGAGTCATCAAAGAGAAAGCCACCTTTTTCCTCAAATTTTAATTGTCCTGTTGAGTCTTCATCAAACAATATGATTCCCCAAGTTGATGGTTCTGCCGATGATGAGTTTGCAAGCCCAAGTTCTGGTTCAGAGGGAATTTCATTTGCACTGGACCAAAAAGGTGAATCCAAGAGGTCTTCCAAACACTGTATACTGCAAAATACCAGAACAAATACTTATAGCAAAGATAACAGGAATAAAGTATGGGGCACTTTGCCATTGTCAATGACCCATAACAATTTTGATCATGCTAGTTTACATTGTGGCCATACTTCTGAAAAGGAAACTGTAGAATCTGTTGACTCAGATTGTTTGGCCAGAAATGAGATAGAGAATAATGGCATAAAGAATGGGGATGAAGGTGTTTCAGACATAAAAGGAGTACAAACACTGGATAATTGCTCTGTGCGGGACTTGATGAGGAGAAAGAGATGCTATCGAGTTGAACAAGCTGACAGTGAATCTGAAATAACTAAAAAACTACATTTAGATGGGGATGAGAAACTCAAAACTGATGGAGAAACAGAAGTCCAGAAGAGCTGTGTCCTGAAAATGACCAATCATGATTTAGTGTGTAGGAAAGCACCCCTTGTAGCTGGCAGTCAAACCGGACTGAGTCTCTGTGGACCGAAGAAGTTTCACTCTACTAGTTCTTCTGATTACTCAGAGGTTTCCAGTGGTAAAAAGTTTAAGGTTGACTCAACACATGTACAAACTGACAACTGTCCACAAATTGACATGGCAGCCTTAGGTAGTGTGCAAAGCTCTTCGATTGAGAATATACAGTCTGTCAGAGATAATTGCATGTATAAATGTCCTTATGGAAGCAAATCTTATGAGCAACACGGTCAGATGAGGTCATGTGATATTGTTGTGGGTGCGAATACTGCAACTGACATTCAAGTATTGCAATGTGTAAGAAGTGATGGCAAAAGACCTAGAGAGAATTTGGGTTTTTATGAGACTAGTGGCATAGAACCTTCGATCAATGACATTATGGGTGATCACATGAGATTAACCTCTACAAGGGCATCTGCCATGGCAGTGAAACCTCTGGATGATGTTATTCCTGCTTCTGCTGGTAGTTACCAGAATGAGATGGAAACTTGGAACAAGCATGTCGCCGATAATGCCCCGGATTCTAAGGGGAAAAGGGTCTTGGGTGTTGCCAAATACTATCAGAATGATGGCTCTCATCTATGCCTATTGAAACCCAAATTTTTGCCTCCTTCTGAGGGTAATGTTCGGAGATGGCTACTTTGTGACGAGAGAGATCAAATGTTTCAACAATCTGATGCAAAGGAGAAGCATATGCCTAAATGGAATACAAGACCTTGTCTTATGTCTAAACATGTCCAAGATGTTGATTCTGAAAAGAAGTCTCCATGCATCAGCAGTGGAGAAATGAATATAATCAAAACAAGCTTGGACGGCTCGCAAGATACTTCTCAGATATCAGGCCCTGATGGGAAATCAACGCCTACTCCTCTTAGTCAAATTGGATTTTGTGACCCTGCAAGAATTGGCTGTGGACAGCAATTGACGGTACTCAGTATTGAGGTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCAGTTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAAAATGATAGTGACACTGTTGTTGATGTTCTCGTCCTTTTGCATTGTAAACTAGAACCTTGTCAAAGAAATTTTGTGAGTCTATCAGGCTGCAAGGTGTTGGTTTTCACAGATGAAAAGCACTTGCTAAAAAAATTTATTAATATTGTATCTTCGTATGATCCAGATATTCTGATGGGTTGGGATATCCAAGGCGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTTGCATCTTGGATTAGGGTTACTTAATAGTTTATCTCGTACTCCATCTGACTCTTGGATTACTTCTGGTGATACTGAAACTTCTGAAAAAGACATATCAGCAACTGCCGTTCCTGATATATCTAGTGCAGATGATGTACAAGAAAGTTCGATAATTGAGGATGAATGGGGACGAACACATTCCAGTGGAGTTCATGTTGGTGGCAGAATTGTGCTTAATGTGTGGCGACTTATCCGTGGAGAAGTTAAGCTCAATTTATACTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGAGGAAAGTTCCTTCAATTCACAACAAGGTCCTAACCAAATGGTTTTCTGGTGGTCCTGGAGGAGCAAGGTATCAGTGTGTCAAATATATTACTGAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTTGATATGGTTAATCGAACATCAGAACTTGCTCGTATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATACCGTGTCGAATCGATGTTTCTGAGGTTGGCACATACACAAAACTATCTCGCCATCTCTCCTGGGAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCTCTTGTGATGGAACCAGAGTCAGGATTTTATTCAGATCCGGTTATTGTATTTGACTTTCAGTCATTATATCCATCCATGATAATTGCATACAACCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGGCATCAAAAGAAAACACGCTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCGGGATCTAAAAGATCAGATTTTGCTTACTCCAAACGGTGTTATGTTTGTTCCTTCGAAGGTTCGTCGAGGTATACTGCCACACTTGTTGGAAGAAATTTTATCAACTAGGGTAATGGTGAAACAAGCAATGAAAAAGTTGGCTCCTTCACAGCAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTGACATATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGTGCAGAGCTTGCAGACAGTATTGTTCAATGCGGCCGTTGCACGCTGGAAAGGGCTATATCATTTGTAAATCAGCATGATAAGTGGAACGCAAAAGTCATTTATGGAGATACTGATAGCATGTTTGTTCTTCTCAAAGGACGCACTATTAAAGAATGTTTCCAAATAGGGAGTGAGATTGCTTCTGCTGTCACCGCTATGAATCCTAGTCCTGTCACCCTGAAGTTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAGAAGCGGTATGTTGGTTACAGTTATGAAAGCCCTGATCAAGGTGAGCCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGTAGAGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGGCTCTTTTTTGAAAATAAGGATTTATCGGAGGTGAGAAGTTATTTGCAACGTCAGTGGAAGAAAATTCTTTCGAGCAAAGTCTCCATTAAAGATTTTGTCTTTGCTAAGGAGGTTCGTTTAGGTAGCTATAGTGCAAGGACATCATCTTTACCTCCAGCTGCAATTGTTGCCACCAAGGCAATGAGATTTGACCCTAGGGCAGAACCGCGTTATGCTGAGAGAGTACCTTATGTTGTAATCCACGGAGAGCCTGGAGCCCGCCTGGTTGACGTGGTTGTGGATCCATTGGAAGTTTTGGCACTTAATTCCCCACTCAGAATAAATGACTTGTATTACATCAATAAACAAGTAATACCTGCTTTGCAGCGGGTGTTTGGGCTTGTTGGTGCTGACCTGAACCAATGGTTCTTAGAGATGCCCCGTCCTTTAAAGGATGCACGTGTAAAGCATCTCATTGCTCCAAATTCACATCGAACGAGAATTGACTCGTATTATCTGTCAAAACATTGTATACTGTGTGGCGGGTTGGTTCAGGCGTCTGCACACATATGCATTCAGTGCTCTGAAAATGGAGTGGCCGCTGCAACGGCTGTGATTAGTAAAACATCAAAGTTGGAGCAAGAGATGCAGCATCTTGTTGCTATATGTGACCACTGTGGAGGTGGAGGCAGGTTTCTGGAAAGTGATGTAAAGTGCACATCAATTTCATGCTCGGTGTTTTATGAGAGACGAAAAGTTCAGAAAGAACTACTAGCGATGAACCATGTTGCTGCTGGTGCAGGCTTCTATCCGAAGTGCATGGTCGAGTGGTTCTGA 4920 0.4159 MVSPDRMWQLPSELDASSNHEAHCPKRQSTCELEGDASVDDILNQQFKMYSSLSQTRSDVQKVQSLVPIWKEQQERTGIYEDTITRDTGKPLPEVVMRSLSGGLDFEKKFVEMCCEAETCASFISSEESRETDIIGSASPPASLCKDAKLHEEGTEANLRLLTVDEMQSSEIIGTQGKKAADKEALNLLKWLATSQAAEDINSDDELIRETILSPLLPATTIDKVLEKANMDYESESQKECQDILDSIDDQLQLESSKRKPPFSSNFNCPVESSSNNMIPQVDGSADDEFASPSSGSEGISFALDQKGESKRSSKHCILQNTRTNTYSKDNRNKVWGTLPLSMTHNNFDHASLHCGHTSEKETVESVDSDCLARNEIENNGIKNGDEGVSDIKGVQTLDNCSVRDLMRRKRCYRVEQADSESEITKKLHLDGDEKLKTDGETEVQKSCVLKMTNHDLVCRKAPLVAGSQTGLSLCGPKKFHSTSSSDYSEVSSGKKFKVDSTHVQTDNCPQIDMAALGSVQSSSIENIQSVRDNCMYKCPYGSKSYEQHGQMRSCDIVVGANTATDIQVLQCVRSDGKRPRENLGFYETSGIEPSINDIMGDHMRLTSTRASAMAVKPLDDVIPASAGSYQNEMETWNKHVADNAPDSKGKRVLGVAKYYQNDGSHLCLLKPKFLPPSEGNVRRWLLCDERDQMFQQSDAKEKHMPKWNTRPCLMSKHVQDVDSEKKSPCISSGEMNIIKTSLDGSQDTSQISGPDGKSTPTPLSQIGFCDPARIGCGQQLTVLSIEVLAESRGELLPDPQFDAINIVALGFQNDSDTVVDVLVLLHCKLEPCQRNFVSLSGCKVLVFTDEKHLLKKFINIVSSYDPDILMGWDIQGGSLGFLAERALHLGLGLLNSLSRTPSDSWITSGDTETSEKDISATAVPDISSADDVQESSIIEDEWGRTHSSGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKVPSIHNKVLTKWFSGGPGGARYQCVKYITERAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVIVFDFQSLYPSMIIAYNLCFCTCLGKVVASKENTLGVSSFSPEQHVLRDLKDQILLTPNGVMFVPSKVRRGILPHLLEEILSTRVMVKQAMKKLAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLERAISFVNQHDKWNAKVIYGDTDSMFVLLKGRTIKECFQIGSEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQGEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFENKDLSEVRSYLQRQWKKILSSKVSIKDFVFAKEVRLGSYSARTSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDVVVDPLEVLALNSPLRINDLYYINKQVIPALQRVFGLVGADLNQWFLEMPRPLKDARVKHLIAPNSHRTRIDSYYLSKHCILCGGLVQASAHICIQCSENGVAAATAVISKTSKLEQEMQHLVAICDHCGGGGRFLESDVKCTSISCSVFYERRKVQKELLAMNHVAAGAGFYPKCMVEWF 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci203g0002 1639 SMART polmehr3 779 1284 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci203g0002 1639 MobiDBLite consensus disorder prediction 1 27 - -
Prci203g0002 1639 Gene3D - 1347 1510 IPR042087 -
Prci203g0002 1639 MobiDBLite consensus disorder prediction 742 761 - -
Prci203g0002 1639 CDD DNA_polB_zeta_exo 778 1027 - -
Prci203g0002 1639 CDD POLBc_zeta 1053 1501 - -
Prci203g0002 1639 Pfam DNA polymerase family B 1046 1493 IPR006134 GO:0000166|GO:0003677
Prci203g0002 1639 Pfam DNA polymerase family B, exonuclease domain 780 910 IPR006133 -
Prci203g0002 1639 PRINTS DNA-directed DNA-polymerase family B signature 1270 1278 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci203g0002 1639 PRINTS DNA-directed DNA-polymerase family B signature 1214 1226 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci203g0002 1639 PRINTS DNA-directed DNA-polymerase family B signature 1105 1118 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci203g0002 1639 ProSitePatterns DNA polymerase family B signature. 1272 1280 IPR017964 GO:0000166|GO:0003676
Prci203g0002 1639 Gene3D Helix hairpin bin 1171 1231 - -
Prci203g0002 1639 FunFam DNA polymerase 788 1088 - -
Prci203g0002 1639 Gene3D Palm domain of DNA polymerase 1091 1336 IPR023211 -
Prci203g0002 1639 MobiDBLite consensus disorder prediction 257 301 - -
Prci203g0002 1639 SUPERFAMILY Ribonuclease H-like 780 1068 IPR012337 -
Prci203g0002 1639 MobiDBLite consensus disorder prediction 255 308 - -
Prci203g0002 1639 Gene3D - 806 1088 IPR036397 GO:0003676
Prci203g0002 1639 Pfam C4-type zinc-finger of DNA polymerase delta 1538 1611 IPR025687 -
Prci203g0002 1639 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 4 1632 IPR030559 GO:0006281|GO:0016035|GO:0019985
Prci203g0002 1639 FunFam DNA polymerase zeta 1172 1231 - -
Prci203g0002 1639 FunFam DNA polymerase 1347 1515 - -
Prci203g0002 1639 SUPERFAMILY DNA/RNA polymerases 1092 1504 IPR043502 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci203g0002 783 1618 Core DNA Replication Machinery Family AT5G63960 28.078 1.72e-86 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci203g0002 K02350 - gmx:100777934 2112.81