Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4642 ATGTTTAAATTCTTGAAGGAGGTGGTGGGTGGATCTGGCAGCGGACTCAAAGATCTCCCTTATAATATCGGCCAACCTTACCCTTCTTCTTGGGGATCTTGGACTCACTATCGCGGCACCTCCAAGGACGATGGATCTCCAGTTTCAATCTTTTCTCTATCTGGGGTTAATGCTCAAGATGGATATCTAGCAGCTGGTCGAAATGGTGTTAAGCGTCTCCGGACAGTCAGGCATCCAAATATTTTGTCATTTCTTCATAGTACTGAGACTGAAACTTCTGATGGTGCTTCTTCCAAGGTTACAATCTATATTGTTACAGAGCCTGTCATGCCACTTTCAGAAAAGATTAAGGAGTTAGGACTAGAAGGTACACAAAGGGACGAATATTATGCTTGGGGGCTGCACCAAATAGCCAAGGCTGTGAGCTTCTTAAATAATGATTGCAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTGGTCACACAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTTTCAGAATTTGATGGAAGCAATGAAGCTTCTGCTGGGCAAATGCTGTATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAGTCTGACTGGGCTGCAATCAGAAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTTATCTATGAGCTATTCTCGGGTGTCAGTTTGGGTAAAACAGAGGAGTTACGCAACACTGCCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGCCTATTGAGTTCCATGCCATCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGATACAATACATTTCATGGAAATTCTTAGCTTGAAAGATAGTGTTGAGAAAGACACCTTCTTTCGCAAGCTTCCAAGTTTAGCAGAGCAGCTACCTCGCCAGATTGTGTTGAAGAAGTTGCTACCTTTGTTGGCTTCTGCTCTTGAATTTGGTTCAGCTGTTGCCCATGCTTTGACAGCATTGTTGAAAATGGGTTCCTGGCTTTCAGTTGAGGAGTTTAGTGTCAAGGTGCTTCCGACTATCGTAAAACTCTTTGCCTCCAATGACCGAGCTATTCGAGTTGCTCTTCTTCAACATATTGATCAATTTGGTGAGTCCTTATCAGCACAGGTTGTTGATGAGCAGGTTTATCCTCATGTTGCTACTGGGTTCTCTGACACGTCTGCTTTTCTGAGGGAACTTACACTTAAGGCCATGCTTATATTAGCTCCAAAGCTGTCTCAAAGGACCATCTCAGGGTCCTTGCTGAAATACCTGTCTAAGTTACAGGTTGATGAAGAACCAGCAATTCGAACAAATACAACCATCTTGCTAGGAAATATTGCAAGCTACCTAAATGAAGGGACTAGAAAAAGAGTTTTGATTAATGCATTTACTGTCCGGGCTTTACGGGATACTTTCCCCCCTGCTAGAGGAGCAGGCGTAATGGCTTTAAGTGCCACCAGCTCCTATTATGATATACCTGAAATTGCAACCCGGATACTTCCTAATGTTGTCGTACTTACAATTGATCCTGACAGTGATGTTCGATCCAAAGCATTTCAAGCCGTTGATCAATTTTTGCAGATAGTGAAGCAATGTTACGATAAGACAAATACAGCAGATACTACTGGAGCTGTTGGCATGGGAATTTCATCAGCTCCAGGAAATGCTAGTTTGCTTGGATGGGCTATGAGCTCCTTGACCCTTAAGGGCAAACCTTCTGACCATGCTCCTCTTGCTTCTGCAAGTACCAGCACAGTTGCATCAACATCTTCCAATTCCAGTTCAAGTGTGGACCCCCCATCAACAGCACCAGTCCGTGTAAGATCTACCTCTGATTTGGCTGAAACTGCTGTCCCTGCATCCCCTACATCAACAGATGGTTGGGGAGAACTGGAGAATGGAATTGAAGACCATGAAAATGACAAGGATGGTTGGGACGATCTGGAACCACTTGATGAGCCGAAGCCATCTTCAGCTCTTTCAAACATTCAAGCAGCTCAAAGGCGGCCAGTCTCTCAACCTGTTTCGCAGGCAAAGCATGCCTCAATTATGCGACCAAAAAGTGCGACAAAGTTGAGCAAGGATGAGGATGATGATTTGTGGGGTTCAATAGCAGTGCCTGCTCCTAAAACATCAAATCCTGCAGACGTGAAATCAACTGCTATTGATGATGATGATCCCTGGGCCGCCATTGCTGCACCAGCACCCACTACTAAAGCGAAGCCCTTATTGGCTAGCAGAGGTCGGGGAGTGAAACCTAGCGCTCCAAAATTAGGTGCGCACAGAATAAACCGGACATCATCTGGGATGTAA 2382 0.4442 MFKFLKEVVGGSGSGLKDLPYNIGQPYPSSWGSWTHYRGTSKDDGSPVSIFSLSGVNAQDGYLAAGRNGVKRLRTVRHPNILSFLHSTETETSDGASSKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNEASAGQMLYAWLVGSQYKPMELAKSDWAAIRKSPPWAIDSWGMGCLIYELFSGVSLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPSLAEQLPRQIVLKKLLPLLASALEFGSAVAHALTALLKMGSWLSVEEFSVKVLPTIVKLFASNDRAIRVALLQHIDQFGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKAMLILAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGVMALSATSSYYDIPEIATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQIVKQCYDKTNTADTTGAVGMGISSAPGNASLLGWAMSSLTLKGKPSDHAPLASASTSTVASTSSNSSSSVDPPSTAPVRVRSTSDLAETAVPASPTSTDGWGELENGIEDHENDKDGWDDLEPLDEPKPSSALSNIQAAQRRPVSQPVSQAKHASIMRPKSATKLSKDEDDDLWGSIAVPAPKTSNPADVKSTAIDDDDPWAAIAAPAPTTKAKPLLASRGRGVKPSAPKLGAHRINRTSSGM 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4642 793 SUPERFAMILY ARM repeat 292 554 IPR016024 -
Prci1g4642 793 MobiDBLite consensus disorder prediction 600 651 - -
Prci1g4642 793 MobiDBLite consensus disorder prediction 595 719 - -
Prci1g4642 793 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 8 772 - -
Prci1g4642 793 MobiDBLite consensus disorder prediction 756 793 - -
Prci1g4642 793 SUPERFAMILY Protein kinase-like (PK-like) 34 286 IPR011009 -
Prci1g4642 793 SMART serkin_6 37 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4642 793 ProSiteProfiles Protein kinase domain profile. 2 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4642 793 MobiDBLite consensus disorder prediction 680 702 - -
Prci1g4642 793 ProSiteProfiles HEAT repeat profile. 365 403 IPR021133 -
Prci1g4642 793 Gene3D Transferase(Phosphotransferase) domain 1 109 279 - -
Prci1g4642 793 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Prci1g4642 793 MobiDBLite consensus disorder prediction 654 676 - -
Prci1g4642 793 Gene3D - 281 557 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4642 Prci-Chr1 59545340 59576073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4642 70 290 MAP Kinase Kinase Kinase AT5G66850 26.891 2.52e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Prci1g4642 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4642 K08876 - gmx:100782748 1291.56