Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci1g4628 | ATGGATTTCGATGCCGCAATTCCTATGTCCCCGGCGGCCCTCTCTCAAGATGCAATGTGGCAAATGAAATTGAGATCAGGTGAAACAATGGAATCTGGACCTTATCCTGAGCGTCCAGGAGAATTAGATTGTTCTTACTACATCAGAACAGGCCTCTGTAGATTTGGGTCAACATGCCGATTTAATCATCCTCCTAACAGGAAGCTGGCCATTGCCACCGCAAGGATGAAAGGTGAGTTCCCGGAAAGAATAGGACAGCCAGAATGTCAGTATTATCTGAAGACGGGAACTTGCAAGTTTGGAGCCACATGCAAGTTTCACCATCCAAGAGAAAAGGCTGGGATTGCTGGAAGAGTTGCCCTAAATAGTTTAGGCTACCCACTTCGCCCGAATGAACCTGAATGTGCTTATTATTTGAGAACTGGACAATGCAAATTTGGGAGCACTTGCAAATTCCACCATCCTCAGCCAAATAATGTGATGATTTCATTGCGGGGTTCTCCTGTTTATCCTACTATTCATTCTCCAACTACACCTAGCCAGCAGTCATCATATGCAGGGGGAATGACAAATTGGTCTAGAGCTTCTTATGTTCCTAGTCCACGCTGGCAAGGCCCTTCAAGCTATGCACCTTTGATTTTACCTCAGGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAGTGGTCAGATTGGATCAATCTCTACGTCAGACAGTCCACAGCAAACAATAGGAAATGGTCAGATGTATGGAACTTCCCGCATGGGTGAACCAGCAAGTGCAGGATCTCAGGGGACATATTCTCAATTTCGTTCTGGCTCTGTTCCTTTGGGGTTTTATGCTCTGCAGAGGGAGAACATATTTCCTGAGAGGCCTGGTCAGCCCGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGGTTTCATCATCCACGTGAGAGATTAATACCCACACCTGACTGTGTCTTGAGTCCTATAGGCCTTCCTTTACGTCCGGGAGAGCCTTTGTGTGTCTTCTATTCTCGTTATGGCATTTGCAAATTTGGCCCAAGTTGCAAGTTTGATCATCCAATGGAAATCTTCCCTTACAATATGTCTGCATCACCTTCATCTGATACCCCTGTCCGTCGTTTATTGGGGTCATCATCAGGAACTGCTGCATTGAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCGGTGAAGCCCCGACGGCTTTCACTGTCAGAGACTAGACCGATGTCTTCTGAAGATAGCATTGATGATGAGGCATGA | 1293 | 0.4633 | MDFDAAIPMSPAALSQDAMWQMKLRSGETMESGPYPERPGELDCSYYIRTGLCRFGSTCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPREKAGIAGRVALNSLGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPNNVMISLRGSPVYPTIHSPTTPSQQSSYAGGMTNWSRASYVPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQIGSISTSDSPQQTIGNGQMYGTSRMGEPASAGSQGTYSQFRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPTPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMEIFPYNMSASPSSDTPVRRLLGSSSGTAALNLSSEGLVESGSVKPRRLSLSETRPMSSEDSIDDEA | 430 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci1g4628 | 430 | Gene3D | - | 39 | 118 | - | - | |
Prci1g4628 | 430 | Gene3D | - | 289 | 372 | - | - | |
Prci1g4628 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 337 | 365 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SUPERFAMILY | CCCH zinc finger | 340 | 365 | IPR036855 | GO:0046872 | |
Prci1g4628 | 430 | SUPERFAMILY | CCCH zinc finger | 295 | 321 | IPR036855 | GO:0046872 | |
Prci1g4628 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 83 | 111 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | MobiDBLite | consensus disorder prediction | 401 | 430 | - | - | |
Prci1g4628 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 132 | 156 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 86 | 110 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 339 | 364 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 43 | 65 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 293 | 318 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SMART | c3hfinal6 | 337 | 364 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SMART | c3hfinal6 | 129 | 156 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SMART | c3hfinal6 | 83 | 110 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SMART | c3hfinal6 | 291 | 318 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SMART | c3hfinal6 | 38 | 65 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | SUPERFAMILY | CCCH zinc finger | 87 | 112 | IPR036855 | GO:0046872 | |
Prci1g4628 | 430 | SUPERFAMILY | CCCH zinc finger | 43 | 66 | IPR036855 | GO:0046872 | |
Prci1g4628 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 157 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 38 | 66 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | FunFam | CCCH type zinc finger protein | 289 | 374 | - | - | |
Prci1g4628 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 291 | 319 | IPR000571 | GO:0046872 | |
Prci1g4628 | 430 | PANTHER | PROTEIN PHOSPHATASE RELATED | 20 | 380 | - | - | |
Prci1g4628 | 430 | Gene3D | - | 122 | 182 | - | - | |
Prci1g4628 | 430 | FunFam | Zinc finger nuclease 2 | 37 | 114 | - | - | |
Prci1g4628 | 430 | SUPERFAMILY | CCCH zinc finger | 132 | 157 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci1g4628 | Prci-Chr1 | 59501275 | 59506872 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci1g4628 | 19 | 428 | C2H2 Transcription Factor Family | AT3G02830 | 62.019 | 3.86e-178 | 500 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Prci1g4628 | zf-CCCH | 5.2e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci1g4628 | - | - | gmx:100786261 | 780.785 |