Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4624 ATGGCAGACGCCGACGTTAATTACAACAAGAAGAATAGTTATCAAATGGGAGAAGGCCCAGAGTTTCAGGGCTTGCGCGGATCGCTGACAAAACGGAGCATCGCAGAGAGAAGGGGATTCAGCTCCGATGCCGCCAGAATAAATACGCCTCGCTTTCGCACAGCTAGCCAATTGGCTTCTCCGGCGGCTCGTTCCCCCCGTGTCACTCTACCCCCCGGTATTAGTCCCACCGCCTTGCTTGACTCGGCCATCATGCTTCCTAATTCTCAGGCATTACCATCTCCCACCACTGGAACTTTTCTGCTGCCTCCTCTCAGTCACCAAGGATCAATTCTCACTTCCGTCCCTCTCGATGCCGGCACTGGCCTTGCTTCATCTTCCAAATTCAAGCCCGAAGCCAATTACAATCCTCTTCCTGCCTCCTCTATTCTCGAAATTCAGGTTTCTGACCATTGCATTATAGCAAAGGGAGGAATTTCAGATTGCCAGCCACCTGTGCCTGATCAAGCGCTACTGGATTTTGCAATTCCGGCAGAGTTTCCTAAAGGACATAAAATAAAAAGTGAATTACATTCTTATGATGATGTGAGAATGGTACAAGATGCAATTTATAACGCTAACAATGTTGAGATGCAAATGCATCGTTCTGAGGAAGCTACTGACAAAAGCTTTCCACCTAACAAGGCTAACAGGGACATTGGACTGCAGAATCTTATGGAAGAAGGCAAGAGAGAGACATCCTATTTGATGGGAATGGTAAGAACCTCAGAGGATGGATACAATTGGAGAAAATATGGACAGAAGCAGGTTAAAGGTAGTGAATATCCTAGAAGCTATTATAAATGCACCCATCCTAACTGTCAGGTCAAGAAAAAGGTGGAACGATCTCTTGATGGCCAAATAACTGAAATTATCTACAAGGGTACTCATAATCATGGGAAACCTCAACCTAGTCGCCGACCATCACTGGGTTCAGCACTTTCTACTGATGAGATGTTAGAAATGGGTGAAGGTGGTGGAACCTTTGTCAAAGTTGATGGTGGTTGGAGAAATATGCATTCAGGGATGAAAGATATAAAACAAAATTCGGATTGGAAGGCTGATAATCAGGAAAGGACACCATCAACTTCTGTTGTAACTGAACTCTCAGATCTTGTATCAACTAACAAGGGGAAACCTATCAGTATGTTTGAGTCAGAGGACACTCTAGAGCTTTCTTCTACACTTGCTAGTCAAGATGATGATGAAGATGGAGCAACTCAAGGAAGCATATCACTTGAAGAGGATGCAGATGAAGAACTTGAGTCAAAAAGAAGGAAGAAAGAGATCTGCTTGATTGATTCAAATTTTGGTTCAAGGGCTGTCCGTGAGCCAAGGGTAGTTGTCCAAATTGAGAGTGAATTGGACATACTTGATGATGGTTATCGCTGGCGAAAGTATGGACAGAAAGTTGTCAAAGGAAATCCAAACCCTAGGAGCTACTACAAATGCACAAGTGCTGGTTGTCTTGTGAGGAAACATGTGGAAAGGGCTTCACACGATCTAAAATTTATAATCACTACTTATGTGGGTAAACACAACCATGAAGTGCCCACCGCTAGAAGCAACAATCAAATGAACTCGAGTGGTGCTGCTATACTTCCAAGTGCAGCCAATGCACAAGCGGCTCTTGCATTACCTGGGAATGTTAGTATTCCAAAGCCTGAAAGTCAAGTTCCAAACACTGCTCCTCATTTTGAGAGGAAGCCTGAATTTAGCAACGAGTTACCGAAGCCCGATTTAATTGGTTTTAGTGATGCGATGAATTTCGGATCTTCCTCCTTATGCCAGATGAAGTATACTCCCTTCAGCAATACCTTGCCTTACGGCTCTTATGAAATGAATTCAGGTCGTCGTGCTACGGCTCAACCTGGTTCTATGACCTCAGTGTTTGCCGACTTTCCAATGTCACTACCGTTGAATCTTCCCTCATCTGGAAGTTTTCTTCCAGCTGGACTCAATCTCAATTGTGTAAGACCTATGGGTCCAATCCAGCCTTTTCTTTCAGGGCAGCAGCTAAAGGAAGTTGACACGGGTTTCCTGGGGTCCAAACAGGAGCACAAAGATACTCTTATCTATGATACTTGCATTCCCATTGTTGATGATGCGAGTCCTTCCCTCACTCCATCGTTAGCATCCACGTCTGTATATCATCGGGCCGTGCACAATTTTCCTTCATAG 2220 0.4455 MADADVNYNKKNSYQMGEGPEFQGLRGSLTKRSIAERRGFSSDAARINTPRFRTASQLASPAARSPRVTLPPGISPTALLDSAIMLPNSQALPSPTTGTFLLPPLSHQGSILTSVPLDAGTGLASSSKFKPEANYNPLPASSILEIQVSDHCIIAKGGISDCQPPVPDQALLDFAIPAEFPKGHKIKSELHSYDDVRMVQDAIYNANNVEMQMHRSEEATDKSFPPNKANRDIGLQNLMEEGKRETSYLMGMVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLDGQITEIIYKGTHNHGKPQPSRRPSLGSALSTDEMLEMGEGGGTFVKVDGGWRNMHSGMKDIKQNSDWKADNQERTPSTSVVTELSDLVSTNKGKPISMFESEDTLELSSTLASQDDDEDGATQGSISLEEDADEELESKRRKKEICLIDSNFGSRAVREPRVVVQIESELDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKFIITTYVGKHNHEVPTARSNNQMNSSGAAILPSAANAQAALALPGNVSIPKPESQVPNTAPHFERKPEFSNELPKPDLIGFSDAMNFGSSSLCQMKYTPFSNTLPYGSYEMNSGRRATAQPGSMTSVFADFPMSLPLNLPSSGSFLPAGLNLNCVRPMGPIQPFLSGQQLKEVDTGFLGSKQEHKDTLIYDTCIPIVDDASPSLTPSLASTSVYHRAVHNFPS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4624 739 Gene3D WRKY domain 247 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 214 549 IPR044810 GO:0003700
Prci1g4624 739 Pfam WRKY DNA -binding domain 472 529 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 Pfam WRKY DNA -binding domain 257 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 FunFam WRKY transcription factor 57 457 531 - -
Prci1g4624 739 FunFam WRKY transcription factor 244 316 - -
Prci1g4624 739 SMART WRKY_cls 471 530 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 SMART WRKY_cls 256 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 MobiDBLite consensus disorder prediction 391 419 - -
Prci1g4624 739 SUPERFAMILY WRKY DNA-binding domain 253 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 MobiDBLite consensus disorder prediction 391 433 - -
Prci1g4624 739 Gene3D WRKY domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 MobiDBLite consensus disorder prediction 353 367 - -
Prci1g4624 739 MobiDBLite consensus disorder prediction 353 379 - -
Prci1g4624 739 SUPERFAMILY WRKY DNA-binding domain 464 531 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 ProSiteProfiles WRKY domain profile. 251 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4624 739 MobiDBLite consensus disorder prediction 1 25 - -
Prci1g4624 739 ProSiteProfiles WRKY domain profile. 466 531 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4624 Prci-Chr1 59448003 59452984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4624 256 534 WRKY Transcription Factor Family AT5G56270 52.759 3.68e-87 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci1g4624 WRKY 5.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4624 K18835 - qsa:O6P43_007761 817.379