Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4585 ATGGGGACAGAACTCATGAGAACATGTATTCAAGAAGATAATGATGAGTTTCCACCAATTCCACCAGGTTTTGAGTCATATACATCGCCCTCACTGGATAAGGGGGAAGGCATTGAGAAACAGAAGGATAAAAACATGATTGGTTTTTCAGTCTCTACAAGTGTTCCTAATTGTAAATTACAGTCACTTCAGGCTAAAACTGATGTTCAAGTCAGTGATACTGCAAAGGTTACTAGGTCCCTTCGTCGAAGACAATGGATCAACCATGGACAGTATGATAACAGTTCAGAGGAAGACTCTGATTCTGAGCGGCTTGATCAAAATTTTTCCCCAGTACCATGTCTGCCAAAGGGAGTTATCCGTGGATGCCCAGATTGCAGTAATTGCCAAAAGGTCATTGCCAGATGGAGACCAGAAGATGCTTGTAGGCCCACCCTTGAGGATGCTCCTGTTTTTAACCCAACTGAAGAGGAGTTTCAAGATACCATGAAATATATAGCAAGTATTTGTTCCAGAGCAGAACCATATGGCATTTGTCGCATTGTTCCCCCTTCATCTTGGAAGCCCCCCTGTCCTCTTAAGGGGAAGACTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGATAAGCTTCAGAATCGTGGTTCAATGAGAAAAATGTCAAGGATTCATTTTAATACTAGACGGAAAAGGAAAAGATGCCCTAGAATGGGATTGGATAATGGCAGTAATAGAGGACCGAATGCAGGATTTTGTGAGATTGAAAGGCCCTTTGGATTTGAACCTGGTCCAGAATTTACTTTGGAAACATTTCAGAGATATGCAGATGAATTTAAGGCCAGATACTTCAGAAAGAATGAGAGTATATCTAATATGGGAGGTAACACAACAATGTCAAAAGGATGGGAGCCTTCTGTGGAGAACATAGAGGGTGAATATTGGCGAATGGTGGAGAGACCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGACCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCCAGAAAGCTTGGTGAAATTGGTTCTGATTCAGGCAAAGAATACATAAAGTGTGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTCTACTTTCATATGAAAGCAGCGATATATCTGGCGTCCTTGTGCCCTGGCTGTACATAGGAATGTGCTTTTCTTCCTTTTGTTGGCATGTGGAGGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGCAAAGATGCCTGCAAATTGGAAGATGCAATGAGAAAGCGTTTACCGGACCTTTTTAAGGAACAACCTGATTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCTATCCTTAAGTCTGAAGGAGTTCCTGTCTATAGGTGTGTCCAGAACCCTGGAGAGTTTGTTCTGACATTCCCTCGAGCCTATCATTCTGGATTCAATTGTGGCTTCAACTGTGCAGAAGCTGTTAATGTAGCTCCAGTTGACTGGCTGCCCCATGGGCAGATTGCCATTGAGCTATACCGAGAACAAGGACGCAAGACTTCTATATCTCATGATAAACTGTTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCACTGTGGGAGCTTAATCTGCTGAAGAAGAATACTTCAGATAATCTAGGATGGAAAAATGTCTGTGGAAAAGATGGTCTTCTGGCAAAAGCACTCAAGACACGCGTTGAGATGGAACAAGTAAGGAGGAAATTTCTCTGCAGTTCTTCACAGGCATTGAAAATGGAGAGCAGTTTTGATGCCACAAGTGAAAGGGAATGCAGTGTTTGCTATTTTGATTTACACTTATCTGCTGCTGGTTGCCATTGTTCCCCAGACCAATATTCTTGCCTGGATCATGCAAAGCAGTTCTGTTCATGTGCTTTGGATTCCAAATTCTTCCTCTTCCGTTATGATATTAATGAATTATTTATCCTTGTTGAGGCATTGGAAGGAAAGTTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGGCTGGCACTGACTTCTTGTATGTCAAAAGACAAAAGCCACTGTAGCAACTTAATTCAGCCTTCCAAGGAAATAATGCTTCGCAAATTGAGGTTAGATTCTTCAGATCTGTCTGGTTCTTCTTGTGGCACTATGCTTAAAGAGATGGTATTGGATCCATCAGTTATTTCTATTGAAGACTCTCATTTGATAGATGTCCCAATAGAGAATCTGATGACTTCCACAAAAAGCATTGATCAGGGTTTTATAAAACCAAGAAAATCAGCAGAAGATGTGATTCCCTCAGGTCATTCAAAAGAACTGTCTACATCTAATGGCTGGACAACCTCATGTGAGCTGACTAGTCATGAGAGATATTCTGAGGAAGAATCAATTATTTGCAAAGCTACTGTGGCGAGCCCTGTTCATCAGTTGCCTGTAGGGGACACTTCATATTCCTTACCTCTTCTCCCCTTAGCTGAACATGGACCTAAGAAAACACCTTATGGGCACGATAATGTTATACTTCTTAGTGATGACGAAACTGATGAACCTAAGATGACAGAAATAGATATCAAGAAAGATATTTCTCGAAGGCTTATAGCTTCCTGTGATAAACTAAACCCATGTAATTATAGAGAAGATCCAGACAGGACTATCCCTGTCACTGATGCTGCTTTAAAGGCTGAGAATGACGTGCCTCAAGAAAGTATGAGTTCTCATTCAACTTATCATTTGCATGTGAAACAGGAACATGATATAATTCAGGGAGCAGTTTTAGATTCTACTCCAGTAGATTTTTCCTGCAAAATAGGTCATGGTAGTGCAGAATCAGTCAGACAAATTCAGGCCTCCTCAACAGGAGAGAGTAGAGATCATTGTCTGAATTCTTCTGAGAGTTGTCCTCTGAACCCACAGCATTCTGGGACTCTCAAACCTAAGAATGAGGACAGCCATGAGAAGATTGGAGTATGCAGTGCAGATAATGCTAGAGCTGTTAATGGAAACCTGTCTTGCAGTCCAAACAATTTGGGAAGATACTATCGGCAGAAAGGTCCTCGTATCGCAAAGGTTGTCCGGCGTATCAACTGCAATGTCGAGCCTCTAGAATTTGGAATTGTTTTTTCTGGAAAGTCATGGTGCAACAGTCGGACTATATTTCCAAAGGGATTTAGAAGCCGTGTAAGATACATAAATGTCTTAGATCCAACAAGTATGTGTTATTATATTTCAGAAATTCTTGATGCTGGACGTGATGGGCCTCTGTTTATGGTGTCCTTGGAACATCATCCAAGTGAGGTCTTCATTCATCTTTCTGCCGGTAGATGCTGGGAACTGGTAAGAGAGAGAGTAAATCAGGAGATCACAAAGCAACATAAGTTGGGAAGAAAAGACCTCCCTCCTTTGCAGCCACGTGGAAGCATTGATGGCTTTGAAATGTTTGGGTTTTCCTCGCCGGCAATAGTGCAGGCTATCGAGGCATTGGATCAAACTCGTGTCTCTGAGGAATATTGGGATTCGCGGCCCTATTCACGGCCTCTAGGGCAAATTCAGCAAACTTCACAGCCAAAGGAAAATGGTGGAAGTGTGGATAGGTCAAATTTTCAAGGGGACCACGGGAGTGAGGTCATGCCTATTGGAATCGATGCAGTATTAAGGAGCCTGTTGAAAAAAGTCAATGCCCAAGAGCTGAACTCATTGTGCAGCATTATTTGTGACAATAACAATACTGCAGCTGGCGGCAGCCTAATTGTTCGACTTCTCAATGAAGAGATCAGCAGTCGTGCCAGATGA 3828 0.4229 MGTELMRTCIQEDNDEFPPIPPGFESYTSPSLDKGEGIEKQKDKNMIGFSVSTSVPNCKLQSLQAKTDVQVSDTAKVTRSLRRRQWINHGQYDNSSEEDSDSERLDQNFSPVPCLPKGVIRGCPDCSNCQKVIARWRPEDACRPTLEDAPVFNPTEEEFQDTMKYIASICSRAEPYGICRIVPPSSWKPPCPLKGKTIWEGSKFATRVQRIDKLQNRGSMRKMSRIHFNTRRKRKRCPRMGLDNGSNRGPNAGFCEIERPFGFEPGPEFTLETFQRYADEFKARYFRKNESISNMGGNTTMSKGWEPSVENIEGEYWRMVERPTEEIEVLYGADLETGVFGSGFPRKLGEIGSDSGKEYIKCGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEDAMRKRLPDLFKEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRALWELNLLKKNTSDNLGWKNVCGKDGLLAKALKTRVEMEQVRRKFLCSSSQALKMESSFDATSERECSVCYFDLHLSAAGCHCSPDQYSCLDHAKQFCSCALDSKFFLFRYDINELFILVEALEGKLSAVYRWAKLDLGLALTSCMSKDKSHCSNLIQPSKEIMLRKLRLDSSDLSGSSCGTMLKEMVLDPSVISIEDSHLIDVPIENLMTSTKSIDQGFIKPRKSAEDVIPSGHSKELSTSNGWTTSCELTSHERYSEEESIICKATVASPVHQLPVGDTSYSLPLLPLAEHGPKKTPYGHDNVILLSDDETDEPKMTEIDIKKDISRRLIASCDKLNPCNYREDPDRTIPVTDAALKAENDVPQESMSSHSTYHLHVKQEHDIIQGAVLDSTPVDFSCKIGHGSAESVRQIQASSTGESRDHCLNSSESCPLNPQHSGTLKPKNEDSHEKIGVCSADNARAVNGNLSCSPNNLGRYYRQKGPRIAKVVRRINCNVEPLEFGIVFSGKSWCNSRTIFPKGFRSRVRYINVLDPTSMCYYISEILDAGRDGPLFMVSLEHHPSEVFIHLSAGRCWELVRERVNQEITKQHKLGRKDLPPLQPRGSIDGFEMFGFSSPAIVQAIEALDQTRVSEEYWDSRPYSRPLGQIQQTSQPKENGGSVDRSNFQGDHGSEVMPIGIDAVLRSLLKKVNAQELNSLCSIICDNNNTAAGGSLIVRLLNEEISSRAR 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4585 1275 ProSiteProfiles JmjC domain profile. 361 524 IPR003347 -
Prci1g4585 1275 MobiDBLite consensus disorder prediction 958 989 - -
Prci1g4585 1275 MobiDBLite consensus disorder prediction 1188 1217 - -
Prci1g4585 1275 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Prci1g4585 1275 FunFam Putative lysine-specific demethylase JMJ16 1042 1180 - -
Prci1g4585 1275 Gene3D Cupin 134 508 - -
Prci1g4585 1275 SMART fyrc_3 1100 1194 IPR003889 GO:0005634
Prci1g4585 1275 SMART cupin_9 358 524 IPR003347 -
Prci1g4585 1275 Gene3D - 1044 1178 - -
Prci1g4585 1275 SMART JmjN_1 148 189 IPR003349 -
Prci1g4585 1275 MobiDBLite consensus disorder prediction 13 36 - -
Prci1g4585 1275 Pfam jmjN domain 150 183 IPR003349 -
Prci1g4585 1275 SUPERFAMILY Clavaminate synthase-like 269 551 - -
Prci1g4585 1275 Pfam C5HC2 zinc finger 614 663 IPR004198 -
Prci1g4585 1275 MobiDBLite consensus disorder prediction 1190 1214 - -
Prci1g4585 1275 Pfam JmjC domain, hydroxylase 391 507 IPR003347 -
Prci1g4585 1275 MobiDBLite consensus disorder prediction 958 995 - -
Prci1g4585 1275 Pfam F/Y-rich N-terminus 1050 1091 IPR003888 GO:0005634
Prci1g4585 1275 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 1145 - -
Prci1g4585 1275 ProSiteProfiles FYR domain FYRC motif profile. 1096 1186 IPR003889 GO:0005634
Prci1g4585 1275 SMART fyrn_3 1050 1094 IPR003888 GO:0005634
Prci1g4585 1275 Pfam F/Y rich C-terminus 1098 1182 IPR003889 GO:0005634
Prci1g4585 1275 ProSiteProfiles FYR domain FYRN motif profile. 1036 1094 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4585 Prci-Chr1 59162978 59173837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4585 1 1273 JUMONJI Transcription Factor Family AT1G08620 53.159 0.0 1220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci1g4585 JmjC 1.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4585 K11446 - gmx:100800271 1758.81