Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4574 ATGCTTTCGTCACCTTCTAAATGCCTGAATGACATCTCTTTTTCCTCAATTTCACAACATGATAGGCAGTATCAAGGTTCTCCCTTCATTTCTAAGACATTGAGAAGAGATGATGTGATGCCCTGGCTAGGAGCTTCCCTTACTCAGAGTGGGGAAGATGCTTCTTTCCCACCTTCACATTCTTCTCATCCAGAAATACATTTGGCAGCGTGCATTTCTCAACCCCCGGAAAGTGATGATATTCCCTGGGGACCAGATCCCTTTCAGGATATTCTTGATCTCTCTGCAAATGATTCCATCCAGAATGATCAGATGGAAAGTAGTTCTTGTTATATGTCTGATGACAACACCAAAAAAACTGATTTTGGGGAGTGGGTAGATCAGTTAATGTCAGTTGATGAATCTCCTCATCCAAACTGGAGCCAGCTTCTTGTTGATGATAATGTACCAGATTCAAAACCAAAGGAGCCCGATGCCACCAAGCAGCAGCATGCACCATCTGGAGAAGTCAGTGCTCCTCCTACTTCAGCATCGAATGCGCTACAAAGTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAAGCTTTCGTGGAAGCAGTGAATAAGCTTGGTGGTGGCGAGAAGGCTACTCCAAAGGGTGTTTTGAATCTAATGAAAATTGAGGCTCTTACTATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACAGCCAGATTCAAACCCGAATCATCAGGAGGAGCTTCTGAGAACAAATCGACAACCAAAGAAATGAAATCTTCAGACTTGAGAGCTAGCATGGGGATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTCCATGAACAACTTGAGGTTCAAAGGAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGTCTTCAGGTGATGTTTGAGAAACAAAGAGAGATGGAGGACAGCAAACACATGACATCATCATCCTCCTTGGACAGGCCCACGGTATTAACTTCCCACACAAGTGAGGGTCAAGAAACCTTAAATGAGGGTCAGGAAAAATCTGGAGTCAGCAATATCAATGCAAGAATCATGGACAAAGAATGTTCTGAGGATGCCTGCACAAGGCAAGAAGTGGAAGAAACTAAAGTTACTAATGAAGAAGAGGCGGGGTATGATCAGTTGGGTGCACCAGCCTCCAAACGGGTGAAAAGTAGATGA 1209 0.4409 MLSSPSKCLNDISFSSISQHDRQYQGSPFISKTLRRDDVMPWLGASLTQSGEDASFPPSHSSHPEIHLAACISQPPESDDIPWGPDPFQDILDLSANDSIQNDQMESSSCYMSDDNTKKTDFGEWVDQLMSVDESPHPNWSQLLVDDNVPDSKPKEPDATKQQHAPSGEVSAPPTSASNALQSKPRMRWTPELHEAFVEAVNKLGGGEKATPKGVLNLMKIEALTIYHVKSHLQKYRTARFKPESSGGASENKSTTKEMKSSDLRASMGITEALRLQMELQKRLHEQLEVQRKLQIQIENQGKRLQVMFEKQREMEDSKHMTSSSSLDRPTVLTSHTSEGQETLNEGQEKSGVSNINARIMDKECSEDACTRQEVEETKVTNEEEAGYDQLGAPASKRVKSR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4574 402 SUPERFAMILY Homeodomain-like 182 238 IPR009057 -
Prci1g4574 402 MobiDBLite consensus disorder prediction 136 183 - -
Prci1g4574 402 MobiDBLite consensus disorder prediction 324 355 - -
Prci1g4574 402 FunFam Myb family transcription factor 183 241 - -
Prci1g4574 402 MobiDBLite consensus disorder prediction 164 183 - -
Prci1g4574 402 Pfam Myb-like DNA-binding domain 186 237 IPR001005 -
Prci1g4574 402 Gene3D - 183 242 - -
Prci1g4574 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 241 IPR017930 -
Prci1g4574 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 180 368 IPR044848 GO:0003700
Prci1g4574 402 MobiDBLite consensus disorder prediction 314 402 - -
Prci1g4574 402 MobiDBLite consensus disorder prediction 240 262 - -
Prci1g4574 402 Pfam MYB-CC type transfactor, LHEQLE motif 268 314 IPR025756 -
Prci1g4574 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 184 238 IPR006447 GO:0003677
Prci1g4574 402 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4574 Prci-Chr1 59103616 59108240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4574 1 355 G2-like Transcription Factor Family AT3G04450 40.554 2.55e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci1g4574 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4574 - - pcin:129312811 796.193