Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4573 ATGTCTCCATCTTTTCCTCTTCTTCCCACTCGTATTGAAGACAAATATATGAAACCCGCAGATTCTTTTTCCTCTGCTGCACGAGACCTGACTGCAAATCCTGCATCAGTGCAGGCTTTTTCATCAAATTCCAACCTGAGAAGTGGAGGGCACATGCTTTCGTCACCTTCTAAATGCCTGAATGACATCTCTTTTTCCTCAATTTCACAACATGATAGGCAGTATCAAGGTTCTCCCTTCATTTCTAAGACATTGAGAAGAGATGATGTGATGCCCTGGCTAGGAGCTTCCCTTACTCAGAGTGGGGAAGATGCTTCTTTCCCACCTTCACATTCTTCTCATCCAGAAATACATTTGGCAGCGTGCATTTCTCAACCCCCGGAAAGTGATGATATTCCCTGGGGACCAGATCCCTTTCAGGATATTCTTGATCTCTCTGCAAATGATTCCATCCAGAATGATCAGATGGAAAGTAGTTCTTGTTATATGTCTGATGACAACACCAAAAAAACTGATTTTGGGGAGTGGGTAGATCAGTTAATGTCAGTTGATGAATCTCCTCATCCAAACTGGAGCCAGCTTCTTGTTGATGATAATGTACCAGATTCAAAACCAAAGGAGCCCGATGCCACCAAGCAGCAGCATGCACCATCTGGAGAAGTCAGTGCTCCTCCTACTTCAGCATCGAATGCGCTACAAAGTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAAGCTTTCGTGGAAGCAGTGAATAAGCTTGGTGGTGGCGAGAAGGCTACTCCAAAGGGTGTTTTGAATCTAATGAAAATTGAGGCTCTTACTATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACAGCCAGATTCAAACCCGAATCATCAGGAGGAGCTTCTGAGAACAAATCGACAACCAAAGAAATGAAATCTTCAGACTTGAGAGCCATGGGGATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTCCATGAACAACTTGAGGTTCAAAGGAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGTCTTCAGGTGATGTTTGAGAAACAAAGAGAGATGGAGGACAGCAAACACATGACATCATCATCCTCCTTGGACAGGCCCACGGTATTAACTTCCCACACAAGTGAGGGTCAAGAAACCTTAAATGAGGGTCAGGAAAAATCTGGAGTCAGCAATATCAATGCAAGAATCATGGACAAAGAATGTTCTGAGGATGCCTGCACAAGGCAAGAAGTGGAAGAAACTAAAGTTACTAATGAAGAAGAGGCGGGGTATGATCAGTTGGGTGCACCAGCCTCCAAACGGGTGAAAAGTAGATGA 1359 0.4422 MSPSFPLLPTRIEDKYMKPADSFSSAARDLTANPASVQAFSSNSNLRSGGHMLSSPSKCLNDISFSSISQHDRQYQGSPFISKTLRRDDVMPWLGASLTQSGEDASFPPSHSSHPEIHLAACISQPPESDDIPWGPDPFQDILDLSANDSIQNDQMESSSCYMSDDNTKKTDFGEWVDQLMSVDESPHPNWSQLLVDDNVPDSKPKEPDATKQQHAPSGEVSAPPTSASNALQSKPRMRWTPELHEAFVEAVNKLGGGEKATPKGVLNLMKIEALTIYHVKSHLQKYRTARFKPESSGGASENKSTTKEMKSSDLRAMGITEALRLQMELQKRLHEQLEVQRKLQIQIENQGKRLQVMFEKQREMEDSKHMTSSSSLDRPTVLTSHTSEGQETLNEGQEKSGVSNINARIMDKECSEDACTRQEVEETKVTNEEEAGYDQLGAPASKRVKSR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4573 452 MobiDBLite consensus disorder prediction 364 452 - -
Prci1g4573 452 Gene3D - 234 293 - -
Prci1g4573 452 Pfam MYB-CC type transfactor, LHEQLE motif 318 364 IPR025756 -
Prci1g4573 452 MobiDBLite consensus disorder prediction 411 434 - -
Prci1g4573 452 MobiDBLite consensus disorder prediction 291 311 - -
Prci1g4573 452 FunFam Myb family transcription factor 234 292 - -
Prci1g4573 452 MobiDBLite consensus disorder prediction 187 234 - -
Prci1g4573 452 NCBIfam myb-like DNA-binding domain, SHAQKYF class 235 289 IPR006447 GO:0003677
Prci1g4573 452 Pfam Myb-like DNA-binding domain 237 288 IPR001005 -
Prci1g4573 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 231 418 IPR044848 GO:0003700
Prci1g4573 452 SUPERFAMILY Homeodomain-like 233 289 IPR009057 -
Prci1g4573 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 292 IPR017930 -
Prci1g4573 452 MobiDBLite consensus disorder prediction 215 234 - -
Prci1g4573 452 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4573 Prci-Chr1 59103603 59108240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4573 30 405 G2-like Transcription Factor Family AT3G04450 40.095 7.00e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci1g4573 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4573 - - pcin:129312811 900.582