LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g4572	ATGTCTCCATCTTTTCCTCTTCTTCCCACTCGTATTGAAGACAAATATATGAAACCCGCAGATTCTTTTTCCTCTGCTGCACGAGACCTGACTGCAAATCCTGCATCAGTGCAGGCTTTTTCATCAAATTCCAACCTGAGAAGTGGAGGGCACATGCTTTCGTCACCTTCTAAATGCCTGAATGACATCTCTTTTTCCTCAATTTCACAACATGATAGGCAGTATCAAGGTTCTCCCTTCATTTCTAAGACATTGAGAAGAGATGATGTGATGCCCTGGCTAGGAGCTTCCCTTACTCAGAGTGGGGAAGATGCTTCTTTCCCACCTTCACATTCTTCTCATCCAGAAATACATTTGGCAGCGTGCATTTCTCAACCCCCGGAAAGTGATGATATTCCCTGGGGACCAGATCCCTTTCAGGATATTCTTGATCTCTCTGCAAATGATTCCATCCAGAATGATCAGATGGAAAGTAGTTCTTGTTATATGTCTGATGACAACACCAAAAAAACTGATTTTGGGGAGTGGGTAGATCAGTTAATGTCAGTTGATGAATCTCCTCATCCAAACTGGAGCCAGCTTCTTGTTGATGATAATGTACCAGATTCAAAACCAAAGGAGCCCGATGCCACCAAGCAGCAGCATGCACCATCTGGAGAAGTCAGTGCTCCTCCTACTTCAGCATCGAATGCGCTACAAAGTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAAGCTTTCGTGGAAGCAGTGAATAAGCTTGGTGGTGGCGAGAAGGCTACTCCAAAGGGTGTTTTGAATCTAATGAAAATTGAGGCTCTTACTATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACAGCCAGATTCAAACCCGAATCATCAGGAGGAGCTTCTGAGAACAAATCGACAACCAAAGAAATGAAATCTTCAGACTTGAGAGCTAGCATGGGGATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTCCATGAACAACTTGAGGTTCAAAGGAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGTCTTCAGGTGATGTTTGAGAAACAAAGAGAGATGGAGGACAGCAAACACATGACATCATCATCCTCCTTGGACAGGCCCACGGTATTAACTTCCCACACAAGTGAGGGTCAAGAAACCTTAAATGAGGGTCAGGAAAAATCTGGAGTCAGCAATATCAATGCAAGAATCATGGACAAAGAATGTTCTGAGGATGCCTGCACAAGGCAAGAAGTGGAAGAAACTAAAGTTACTAATGAAGAAGAGGCGGGGTATGATCAGTTGGGTGCACCAGCCTCCAAACGGGTGAAAAGTAGATGA	1362	0.442	MSPSFPLLPTRIEDKYMKPADSFSSAARDLTANPASVQAFSSNSNLRSGGHMLSSPSKCLNDISFSSISQHDRQYQGSPFISKTLRRDDVMPWLGASLTQSGEDASFPPSHSSHPEIHLAACISQPPESDDIPWGPDPFQDILDLSANDSIQNDQMESSSCYMSDDNTKKTDFGEWVDQLMSVDESPHPNWSQLLVDDNVPDSKPKEPDATKQQHAPSGEVSAPPTSASNALQSKPRMRWTPELHEAFVEAVNKLGGGEKATPKGVLNLMKIEALTIYHVKSHLQKYRTARFKPESSGGASENKSTTKEMKSSDLRASMGITEALRLQMELQKRLHEQLEVQRKLQIQIENQGKRLQVMFEKQREMEDSKHMTSSSSLDRPTVLTSHTSEGQETLNEGQEKSGVSNINARIMDKECSEDACTRQEVEETKVTNEEEAGYDQLGAPASKRVKSR	453

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci1g4572	453	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	231	419	IPR044848	GO:0003700
Prci1g4572	453	MobiDBLite	consensus disorder prediction	291	313	-	-
Prci1g4572	453	MobiDBLite	consensus disorder prediction	375	406	-	-
Prci1g4572	453	MobiDBLite	consensus disorder prediction	365	453	-	-
Prci1g4572	453	Gene3D	-	234	293	-	-
Prci1g4572	453	FunFam	Myb family transcription factor	234	292	-	-
Prci1g4572	453	MobiDBLite	consensus disorder prediction	187	234	-	-
Prci1g4572	453	MobiDBLite	consensus disorder prediction	412	435	-	-
Prci1g4572	453	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	235	289	IPR006447	GO:0003677
Prci1g4572	453	Pfam	MYB-CC type transfactor, LHEQLE motif	319	365	IPR025756	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g4572	Prci-Chr1	59103479	59108240	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g4572	30	406	G2-like Transcription Factor Family	AT3G04450	40.334	5.08e-75	239

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Prci1g4572		Myb_DNA-binding	1.7e-07	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g4572	-		-	pcin:129312811	895.96

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