Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4571 ATGACTACTTTAAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTACTGGAACAACTTGATATGGCTGGTGTTGAGCTGCCAAGGCTTTATAAGTGGATAGAAAGGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAAAAAGAGGAATCATTGGGTAGGTACTCAGGCAACTGAAGAATTTTCTGAGTCAGTTGCCGATGCTGAGAAGTATCTACAAGTCTACAGACCTGTTAGAAGACGACATGGTAAATTATTGGAAGAGGGTGCCAGTGGTTTTCTTCAAAAAAAGCTTGATGAATCCAGTGAACCAGTAAAAGAAAAAGCTGAGGTAGATTGGGGTATGTTTAACAAAATATTTCACAACAGTGGTGATGCTGATGCTTCATTTGGCAGCAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCATTGATGGCACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGATGACATTGATGGAACTTCTACCGATCCATTTATTGCAGCCGCAATTGCAAATGAAAAGGAACTAGAGCTTACTGATGAGCAGAAGAGAAAATTTAAAAAGGTCAAAGAAGAAGAAGATGTGATTGTTGATCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCAAAAGAATAAAAAACAGAGGGAAACTATAGAGAGTGTCCAACAGAAGTCTTCATTTATTGATTGCTCTAATCCTGATATGAAGGAAGAAACTTGTGACGATGATGGCGAAAAGGTGACTAACAATGAAGTTGGGTGTCTGAATACAAAAACTGATAATATTGAAGATCTGGAGAGCAGTTATGACCATGACAAAGTGAAGCCTATGAATATTGGCCCTTTGTCAGAGCTCTCTAAATCTTTATTGCCTGATGTCAATCACAGAGGTACCAAGCGACTAAATGATGGTGAAGAGTATTATGATGCTAAAAAGGGTCGAACTACTATCAACAGTGGTGATGAAGCTGATGCAGTTGAAAATAATATAGTTAGGAATGCAAATGCATTAGATGATCAGTCTGAGATGCAAGGCACTTGTACCAGCATTGCTGATTGTCTTCCTTCACAGCATCTGGATAAGAAATTTTGCTGCACTGTTTGTGATAAAGTGGCTTTTGAAGTTCACCAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCTATTCTTTAACGGAAGGAAAGAAACGTGTGAAGGATCTCAATCCTGATAGCTCTGCGTGTTATTGTGCATGGTGTGGAGGAAGCAATGAATTAGTTAGCTGCAAGTCATGCAAAGTGTTATTCTGCAACAACTGCATAAAGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGACCACTGGTTGGCATTGTTGTTGCTGTCAGCCAAATCTCTTGCAAGGACTATCATCACAACTAGAGAAAGCTATGGGATCTGTCGACACATCAGTTTCCAGCTCCAGTAGTGATTCAGATAATTCACATGCAGAGATTGATGTTACTATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCAATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCTCTGCGAGTACAGTTTTCTGCCTCATCTAACATCATGGGATCTTCTGGATGCAACGGGAATTTATCTGAAGGTGCAAGTTCTGAAGTCCTAGGTGACGCTTTAACAGGCTATGTAGTGAATGTTGTGAGGGAAAAAGGTGAAGAGGCTGTCAGAATTCCTCCTAGTACATCAGCCAAACTGAAAGCTCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCCGGGGATAAAGGTCTTGGCTGTATTCTCGCTCATACAATGGGCCTTGGCAAAACCTTTCAGGTGATAACTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGCACTTATTGTCACACCTGTCAATGTTCTGCACAATTGGCGGCAAGAGTTTATCAAATGGAGGCCATCAGAAGTAAAACCGCTGAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCTGAAATACTTGCAAAATGGAGAAAAAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTCCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGACACACTGCCCGAGAAATTTGTCATGCTTTGCAGGATGGACCAGATATACTTGTTTGTGATGAAGCCCATATGATAAAGAATATAAAGGCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAAAACAATCTTATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACGCTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTTCAACGAATGGACATGAATGTGGTGAAAAAGGATTTGCCTCCCAAAACTGTCTTTGTGATAAGTGTCAAGCTTTCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGACGTGCATGGATTCACAAATGACCGGGCTTCTAATGAAAAAATGAGAAAGAAATGTTTTTTTGTTGGGTACCAGGCTTTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTATGTAAGACAAGAAGATGCAGTTGAGAATTTTCTTGTGGACGACAGCTCTAGTGACGAAAATTCTGATTATAACGTGCCTGTTGGAGAGAAAGTTAGATGTGCAAATGAGCTTCTGCAAAGGAAAGATGAGAATGGGTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAAGAACTTGACTACAGTGGCAAAATGGTTTTGCTCGTGGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCCAGACTACCTCGACGAGGCAAACATGGCAAATTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGATGGTTGAGAGGTTTAATGAGCCTTCCAATAAGAGAGTGAAGTGCACTCTTATTTCAACCAGAGCTGGTTCTTTGGGTATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGACAAAATATATAAGCGCCAGGTAACAAAGGAGGGACTTGCTGCTAGAGTAGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACTCTGAGACATTGGCTGAACTGAGCCAAGAGAATGGGCATTCAGTGGAACAGACAGTACCAAATTCAAATGGAATCAGCCATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCGTCCAAAGTGGATTGCTAATTATCATGAACACGAAACCTTATTGCAAGAGAATGAAGAAGAAAAGCTATCGAAAGAGGAGCAAGACATGGCTTGGGAAGTATACAGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGTGAATCTCTGCCTGTTCAAAAACCACTAGAGCCAAACGCAGCACCCTCTGTATCAAAGACCCGCAGCCTCTCACCAACAAAGTTGAGGAACCATTTTCTAACGCGGAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAGGGCACTAAATTTGGTTGCAGCACAGTCTGTGGGGAATGCGCTCGAGAGATCAGATGGGAGGACTTGAAGAACAGAGATGGGAGAGTAAGAAGGTGA 4122 0.41 MTTLKEEWEAVLDDLETESAYLLEQLDMAGVELPRLYKWIEREAPNGCLTEAWKKRNHWVGTQATEEFSESVADAEKYLQVYRPVRRRHGKLLEEGASGFLQKKLDESSEPVKEKAEVDWGMFNKIFHNSGDADASFGSKNWASVYLASTPQQAALMALEFPGVNEVEEIDDIDGTSTDPFIAAAIANEKELELTDEQKRKFKKVKEEEDVIVDRKLQIHLKRRRYQKNKKQRETIESVQQKSSFIDCSNPDMKEETCDDDGEKVTNNEVGCLNTKTDNIEDLESSYDHDKVKPMNIGPLSELSKSLLPDVNHRGTKRLNDGEEYYDAKKGRTTINSGDEADAVENNIVRNANALDDQSEMQGTCTSIADCLPSQHLDKKFCCTVCDKVAFEVHQHPLLKVIICRDCYSLTEGKKRVKDLNPDSSACYCAWCGGSNELVSCKSCKVLFCNNCIKKNLGAEFLSEVQTTGWHCCCCQPNLLQGLSSQLEKAMGSVDTSVSSSSSDSDNSHAEIDVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMGSSGCNGNLSEGASSEVLGDALTGYVVNVVREKGEEAVRIPPSTSAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVITFLYTAMRSTDLGLRTALIVTPVNVLHNWRQEFIKWRPSEVKPLRVFMLEDVSRDRRAEILAKWRKKGGIFLIGYTAFRNLSFGKHVKDRHTAREICHALQDGPDILVCDEAHMIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKKCFFVGYQALAQIWNHPGILQLTKEDKDYVRQEDAVENFLVDDSSSDENSDYNVPVGEKVRCANELLQRKDENGFFLKGWWNDLLHEKNYKELDYSGKMVLLVDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKHGKFWKKGKDWYRLDGRTESSERQKMVERFNEPSNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEDKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENSETLAELSQENGHSVEQTVPNSNGISHSDKLMESLLSKHRPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPLEPNAAPSVSKTRSLSPTKLRNHFLTRKCTNLSHLLTLRSQGTKFGCSTVCGECAREIRWEDLKNRDGRVRR 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4571 1373 Pfam SNF2-related domain 637 939 IPR000330 GO:0005524|GO:0140658
Prci1g4571 1373 Coils Coil 1251 1271 - -
Prci1g4571 1373 MobiDBLite consensus disorder prediction 494 514 - -
Prci1g4571 1373 Coils Coil 5 25 - -
Prci1g4571 1373 Gene3D - 588 869 IPR038718 -
Prci1g4571 1373 SMART ultradead3 611 832 IPR014001 -
Prci1g4571 1373 CDD SF2_C_SNF 1012 1155 - -
Prci1g4571 1373 ProSiteProfiles ADD domain profile. 371 503 IPR025766 -
Prci1g4571 1373 MobiDBLite consensus disorder prediction 494 512 - -
Prci1g4571 1373 Pfam Helicase conserved C-terminal domain 1021 1144 IPR001650 -
Prci1g4571 1373 SMART helicmild6 1047 1144 IPR001650 -
Prci1g4571 1373 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1024 1192 IPR001650 -
Prci1g4571 1373 CDD ADDz_ATRX 379 477 - -
Prci1g4571 1373 Gene3D - 880 1229 IPR027417 -
Prci1g4571 1373 SUPERFAMILY FYVE/PHD zinc finger 423 484 IPR011011 -
Prci1g4571 1373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 637 820 IPR014001 -
Prci1g4571 1373 PANTHER RAD54-LIKE 1 1366 IPR044574 GO:0016887
Prci1g4571 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 869 IPR027417 -
Prci1g4571 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4571 Prci-Chr1 59075452 59095548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4571 679 1197 RAD5 or RAD16-like Gene Family AT5G22750 25.258 2.33e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci1g4571 SNF2_N 6.4e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4571 K10779 - gmx:100794911 2043.08