Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4569 ATGGAGGGAAAGACTGAGGAAGTCGAAGATATTGGAAGTGCATCTAGTGGTTCATTTATTGATGATTCAGATGATGGATATTCAACTTCTGAATTAGATGACAAAGCACATCTGGAGGAACCTTTGACTGAGGAAGAAATTGAAGGTCTGATTGCTGAGTTGTTAGAAGTTGAGAGCAAGGCTGCAGAGGCTCAAGAAGCTCTCGAGGAGGAGTCTCTTAACAAAGTAGGGATCGAGGTTAGGCGAGAGTTGGAGCAAACTCTTCAAGGCGATGATTTGGAATCTGCTGTTGCAGATGAGATGACTACTTTAAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTACTGGAACAACTTGATATGGCTGGTGTTGAGCTGCCAAGGCTTTATAAGTGGATAGAAAGGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAAAAAGAGGAATCATTGGGTAGGTACTCAGGCAACTGAAGAATTTTCTGAGTCAGTTGCCGATGCTGAGAAGTATCTACAAGTCTACAGACCTGTTAGAAGACGACATGGTAAATTATTGGAAGAGGGTGCCAGTGGTTTTCTTCAAAAAAAGCTTGATGAATCCAGTGAACCAGTAAAAGAAAAAGCTGAGGTAGATTGGGGTATGTTTAACAAAATATTTCACAACAGTGGTGATGCTGATGCTTCATTTGGCAGCAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCATTGATGGCACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGATGACATTGATGGAACTTCTACCGATCCATTTATTGCAGCCGCAATTGCAAATGAAAAGGAACTAGAGCTTACTGATGAGCAGAAGAGAAAATTTAAAAAGGTCAAAGAAGAAGAAGATGTGATTGTTGATCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCAAAAGAATAAAAAACAGAGGGAAACTATAGAGAGTGTCCAACAGAAGTCTTCATTTATTGATTGCTCTAATCCTGATATGAAGGAAGAAACTTGTGACGATGATGGCGAAAAGGTGACTAACAATGAAGTTGGGTGTCTGAATACAAAAACTGATAATATTGAAGATCTGGAGAGCAGTTATGACCATGACAAAGTGAAGCCTATGAATATTGGCCCTTTGTCAGAGCTCTCTAAATCTTTATTGCCTGATGTCAATCACAGAGGTACCAAGCGACTAAATGATGGTGAAGAGTATTATGATGCTAAAAAGGGTCGAACTACTATCAACAGTGGTGATGAAGCTGATGCAGTTGAAAATAATATAGTTAGGAATGCAAATGCATTAGATGATCAGTCTGAGATGCAAGGCACTTGTACCAGCATTGCTGATTGTCTTCCTTCACAGCATCTGGATAAGAAATTTTGCTGCACTGTTTGTGATAAAGTGGCTTTTGAAGTTCACCAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCTATTCTTTAACGGAAGGAAAGAAACGTGTGAAGGATCTCAATCCTGATAGCTCTGCGTGTTATTGTGCATGGTGTGGAGGAAGCAATGAATTAGTTAGCTGCAAGTCATGCAAAGTGTTATTCTGCAACAACTGCATAAAGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGACCACTGGTTGGCATTGTTGTTGCTGTCAGCCAAATCTCTTGCAAGGACTATCATCACAACTAGAGAAAGCTATGGGATCTGTCGACACATCAGTTTCCAGCTCCAGTAGTGATTCAGATAATTCACATGCAGAGATTGATGTTACTATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCAATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCTCTGCGAGTACAGTTTTCTGCCTCATCTAACATCATGGGATCTTCTGGATGCAACGGGAATTTATCTGAAGGTGCAAGTTCTGAAGTCCTAGGTGACGCTTTAACAGGCTATGTAGTGAATGTTGTGAGGGAAAAAGGTGAAGAGGCTGTCAGAATTCCTCCTAGTACATCAGCCAAACTGAAAGCTCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCCGGGGATAAAGGTCTTGGCTGTATTCTCGCTCATACAATGGGCCTTGGCAAAACCTTTCAGGTGATAACTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGCACTTATTGTCACACCTGTCAATGTTCTGCACAATTGGCGGCAAGAGTTTATCAAATGGAGGCCATCAGAAGTAAAACCGCTGAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCTGAAATACTTGCAAAATGGAGAAAAAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTCCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGACACACTGCCCGAGAAATTTGTCATGCTTTGCAGGATGGACCAGATATACTTGTTTGTGATGAAGCCCATATGATAAAGAATATAAAGGCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAAAACAATCTTATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACGCTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTTCAACGAATGGACATGAATGTGGTGAAAAAGGATTTGCCTCCCAAAACTGTCTTTGTGATAAGTGTCAAGCTTTCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGACGTGCATGGATTCACAAATGACCGGGCTTCTAATGAAAAAATGAGAAAGAAATGTTTTTTTGTTGGGTACCAGGCTTTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTATGTAAGACAAGAAGATGCAGTTGAGAATTTTCTTGTGGACGACAGCTCTAGTGACGAAAATTCTGATTATAACGTGCCTGTTGGAGAGAAAGTTAGATGTGCAAATGAGCTTCTGCAAAGGAAAGATGAGAATGGGTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAAGAACTTGACTACAGTGGCAAAATGGTTTTGCTCGTGGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCCAGACTACCTCGACGAGGCAAACATGGCAAATTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGATGGTTGAGAGGTTTAATGAGCCTTCCAATAAGAGAGTGAAGTGCACTCTTATTTCAACCAGAGCTGGTTCTTTGGGTATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGACAAAATATATAAGCGCCAGGTAACAAAGGAGGGACTTGCTGCTAGAGTAGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACTCTGAGACATTGGCTGAACTGAGCCAAGAGAATGGGCATTCAGTGGAACAGACAGTACCAAATTCAAATGGAATCAGCCATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCGTCCAAAGTGGATTGCTAATTATCATGAACACGAAACCTTATTGCAAGAGAATGAAGAAGAAAAGCTATCGAAAGAGGAGCAAGACATGGCTTGGGAAGTATACAGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGTGAATCTCTGCCTGTTCAAAAACCACTAGAGCCAAACGCAGCACCCTCTGTATCAAAGACCCGCAGCCTCTCACCAACAAAGTTGAGGAACCATTTTCTAACGCGGAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAGGGCACTAAATTTGGTTGCAGCACAGTCTGTGGGGAATGCGCTCGAGAGATCAGATGGGAGGACTTGAAGAACAGAGATGGGAGAGTAAGAAGGTGA 4422 0.4118 MEGKTEEVEDIGSASSGSFIDDSDDGYSTSELDDKAHLEEPLTEEEIEGLIAELLEVESKAAEAQEALEEESLNKVGIEVRRELEQTLQGDDLESAVADEMTTLKEEWEAVLDDLETESAYLLEQLDMAGVELPRLYKWIEREAPNGCLTEAWKKRNHWVGTQATEEFSESVADAEKYLQVYRPVRRRHGKLLEEGASGFLQKKLDESSEPVKEKAEVDWGMFNKIFHNSGDADASFGSKNWASVYLASTPQQAALMALEFPGVNEVEEIDDIDGTSTDPFIAAAIANEKELELTDEQKRKFKKVKEEEDVIVDRKLQIHLKRRRYQKNKKQRETIESVQQKSSFIDCSNPDMKEETCDDDGEKVTNNEVGCLNTKTDNIEDLESSYDHDKVKPMNIGPLSELSKSLLPDVNHRGTKRLNDGEEYYDAKKGRTTINSGDEADAVENNIVRNANALDDQSEMQGTCTSIADCLPSQHLDKKFCCTVCDKVAFEVHQHPLLKVIICRDCYSLTEGKKRVKDLNPDSSACYCAWCGGSNELVSCKSCKVLFCNNCIKKNLGAEFLSEVQTTGWHCCCCQPNLLQGLSSQLEKAMGSVDTSVSSSSSDSDNSHAEIDVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMGSSGCNGNLSEGASSEVLGDALTGYVVNVVREKGEEAVRIPPSTSAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVITFLYTAMRSTDLGLRTALIVTPVNVLHNWRQEFIKWRPSEVKPLRVFMLEDVSRDRRAEILAKWRKKGGIFLIGYTAFRNLSFGKHVKDRHTAREICHALQDGPDILVCDEAHMIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKKCFFVGYQALAQIWNHPGILQLTKEDKDYVRQEDAVENFLVDDSSSDENSDYNVPVGEKVRCANELLQRKDENGFFLKGWWNDLLHEKNYKELDYSGKMVLLVDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKHGKFWKKGKDWYRLDGRTESSERQKMVERFNEPSNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEDKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENSETLAELSQENGHSVEQTVPNSNGISHSDKLMESLLSKHRPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPLEPNAAPSVSKTRSLSPTKLRNHFLTRKCTNLSHLLTLRSQGTKFGCSTVCGECAREIRWEDLKNRDGRVRR 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4569 1473 Pfam SNF2-related domain 737 1039 IPR000330 GO:0005524|GO:0140658
Prci1g4569 1473 MobiDBLite consensus disorder prediction 1 47 - -
Prci1g4569 1473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1124 1292 IPR001650 -
Prci1g4569 1473 PANTHER RAD54-LIKE 31 1466 IPR044574 GO:0016887
Prci1g4569 1473 MobiDBLite consensus disorder prediction 594 614 - -
Prci1g4569 1473 CDD SF2_C_SNF 1112 1255 - -
Prci1g4569 1473 SMART helicmild6 1147 1244 IPR001650 -
Prci1g4569 1473 MobiDBLite consensus disorder prediction 594 612 - -
Prci1g4569 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 975 1321 IPR027417 -
Prci1g4569 1473 Coils Coil 47 74 - -
Prci1g4569 1473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 737 920 IPR014001 -
Prci1g4569 1473 MobiDBLite consensus disorder prediction 29 44 - -
Prci1g4569 1473 Coils Coil 98 125 - -
Prci1g4569 1473 Gene3D - 980 1329 IPR027417 -
Prci1g4569 1473 SMART ultradead3 711 932 IPR014001 -
Prci1g4569 1473 Coils Coil 1351 1371 - -
Prci1g4569 1473 Gene3D - 688 969 IPR038718 -
Prci1g4569 1473 Pfam Helicase conserved C-terminal domain 1121 1244 IPR001650 -
Prci1g4569 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 969 IPR027417 -
Prci1g4569 1473 ProSiteProfiles ADD domain profile. 471 603 IPR025766 -
Prci1g4569 1473 CDD ADDz_ATRX 479 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4569 Prci-Chr1 59074071 59095548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4569 779 1297 RAD5 or RAD16-like Gene Family AT5G22750 25.258 3.07e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci1g4569 SNF2_N 7.3e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4569 K10779 - gmx:100794911 2153.64