Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4560 ATGGGAACTCCGGTGAATATCATTGCAGGTTCTCATGTCTGGATTGAAGATCCAGATGTTGCTTGGATTGATGGACAGGTATCAAAAATCACTGGAAAAGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTTTCTGCAAAATTATCAAAAATATATCCCAAAGATATGGAAGCTCCTGCTGGTGGAGTGGATGATATGACAAAGCTGTCTTATTTGCATGAGCCTGGTGTCCTGCAGAACCTAAAATCTCGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTCATTGCCATAAATCCATTCCAAAGACTACCTCATCTTTATGATCCTCACATGATGCAACAGTACAAGGGAGCACCATTCGGAGAACTAAGTCCTCATGTTTTTGCAGTAGCTGATGTTGCATATAGGGCAATGATTAACGAAGGAAAAAGCAACTCAATTTTGGTCAGCGGGGAAAGTGGAGCCGGTAAAACTGAAACTACGAAAATGCTTATGCGATACTTAGCTTTCTTAGGCGGTAGGGCTGCTACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAGACTGTAAGGAATAACAATTCGAGCCGTTTTGGCAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACTTACCTTCTGGAGAGGTCTCGGGTCTGCCAAATTAACGATCCTGAACGCAACTACCACTGCTTTTATCTCCTTTGTGCTGCACCACACGAGGAAATTGAGAAATACAAATTAGATAGTCCTAGATCATTTCACTACCTGAACCAATCAAATTTTTATGAACTGGCTGATGTAAGTGATGCTCGTGAGTATCTTGCCACCCGTCGAGCTATGGATGTTGTTGGAATAAGCCAAAAAGATCAGGATGCAATTTTCCGAGTTGTCGCTGCAATTCTTCATCTTGGTAATATTGCTTTTGCCAAAGGAAAGGAAGTTGACTCATCAGTTCCAAAAGATGACAAAGCCAAATTCCACTTGAAAACAACTGCAGAGCTTCTCATGTGTGATGCTGATGCCTTACAAGATGCATTGTGCAAACGCGTCATGGTCACCCCTGAAGAAGTTATAAAGCGGAGCCTTGACCCCCAAAGTGCATTAATCAGTAGAGATGGCTTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGTTGGTGGACAAGATTAATAATTCAATCGGACAAGATCCAAATTCCAAATGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAAACTAACAGTTTTGAGCAGTTCTGCATCAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTGATTGGAGCTACATTGAATTTGTTGATAATCAAGATGTTTTAGACCTTATTGAAAAGAAACCTGGAGGAATCGTCGCTCTGCTCGATGAGGCTTGCATGTTTCCCAAGTCAACACATGAAACATTTGCAAATAAGCTTTATCAATCATTCAAGACTCACAAGCGTTTTATAAAGCCAAAATTGTCTCGAACAGATTTCACCATTGCTCATTATGCTGGGGAGGTCTTATACCAGTCGGACCAGTTTTTAGATAAAAATAAAGATTACGTGGTTCCTGAACATCAAGATTTGTTGAGTGCTTCCAAATGTCCTTTCGTAGCAGGTCTTTTTCCTCCTCTTCCAGAAGAGACATCTAAGTCGTCGAAGTTTTCTTCAATAGCTTCCCGTTTTAAGCTACAACTACAGCAACTAATGGAGACATTGAACTCGACAGAACCTCATTATGTCAGGTGTATAAAACCAAACAATGTCCTTAAGCCTGCAATATTTGAGAATATCAACATTATGCAACAACTTCGCTGTGGCGGTGTTCTAGAGGCAATCAGAATTAGTTGCGCTGGTTACCCTACTCGCCGTCTTTTCTTTGAATTTGCTCACAGATTTGGAATCCTTGCCCCAGAAGTTGTGGATGGAAACTCTGATGAAAAGGTTGTTTGCCAAAAGATTCTGGAAAAAGTGGGTCTTAAGGGATATCAGATTGGGAAAACAAAGATATTCCTGAGAGCTGGTCAGATGGCTGAACTTGATGCACAGAGGGCTCAAGTACTCAGTCGGGCAGCCAAAATTATCCAACGTCGCATACGGACCCATCAAGCTCGTAATCATTATCTTGCATTGCATAGAACTACTGTATTCATGCAATCTCTATGTAGAGGAAGACTGGCATGCAAAGATTATGAAAACATGAGAAGGGAGGCTGCTGCAAAGAAAATTCAGAAAAACGTGCGCGGATATGCAGCTAGGAAAGCCTATAAAAGATTCCATGCTTCAGTACTTATCTTGCAAACAGGTTTAAGGACAATGGGTGCTCGTAATCAGTTCAGATTTAGGAAGCAGACTAAAGCTGCAGTCATTGTTCAGGCCTGGTGGCGATGCCGGAAGGCTACTTTATACTATAAAAGGCTCAAGAAAAGTACAATAGTTGCACAATGCAGATGGAGGGGGCGGTTGGCCAGGAGAGAACTTAGGAAACTCAAAATGGCTGCAAGAGAAACTGGCGCGCTTAAAGAAGCGAAGGATAAGCTGGAAAAACGAGTGGAGGAACTCACTTGGCGTCTGCAATTAGAAAAAAGTTTAAGGACTAACCTAGAAGAAGCCAAAGCACAAGAAGTAGCAAAACTGCAGAACTCGCTACAGGAGATGCAGAACAAGATTGATGAAACTAATGCTTTACTTGTCAAGGAGAAGGAGAATGCAAAGAAAGTTGTAGAAGAAGCACCTCCTGTTATTAAAGAAACACAAATTCTTGTGGAAGACACACAAAAGATTGAGTCACTAACGGGGGAAGTTGAGAGTCTGAAGACCTCATTAGAGTCAGAGAAACAAAAAGTTGAAGATTTTGAAAGAAAATACAATGAATCTCAAGCTTTTATTGAAGAACAGGGTAAAAAATTAGAGGAGACAGAGAAGAAGGTTGGTCAACTCCAGGAATCGTTAACCAGGTTGGAAGAAAAAATTACTAATTTAGAATCAGAGAATCGGGTTCTACGTCAGCAAGCTGTATCCATGACACCAAACAAGTTCCTTTCTGGACGCTCTAGATCTATCATACAGAGAGGTTCTGAAAGTGGCCATATAGTCGGAGAAGCGAAGGTACCCGTGGATCTTTATAGCTCGTCAATTAACCAGAGGGAACACGCTGAAGTAGATGATAAACCACAAAAGTCACTAAATGAGAAACAGCAGGAAAATCAAGACTTGCTCATCAGATGTATTGCACAACATGTAGGCTTTGCGGGGAACAGACCTATTGCTGCATGTATCATATACAAATGTCTCTTGCATTGGAGATCATTTGAAGTAGAGCGTACTAGTGTTTTTGATCGTATCATTCAAACTATTGGCAATGCAATTGAGACCCAGGACAACAATGATGTCTTGGCTTATTGGTTATCCAATGCATCCACACTTCTATTGTTACTCCAGCGCACACTCAAGGCAAGTGGTGCTGCTGGAATGGCCCCACAACGCCGTCGTTCTTCATCCGCAACCCTATTTGGGAGAATGACACAGAGTTTCCGTGGAACCCCAACAGGAGTTAATCTCTCCTTAATCAATGGTAGCATAAGCGGTGGTGTAGACACATTACGACAAGTCGAAGCCAAGTACCCAGCTTTGCTTTTCAAACAGCAGCTTACTGCATATGTAGAAAAAATATATGGAATGATTCGAGATAATCTAAAGAAAGATTCCCCCCTGCTAGGGTTGTGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTGGTTAAGGGATCACTCTCACTTGCAAATACTGAAGCTCAGAAAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGTCTTGGGAACTTTTTGAATACTTTGAAAGCAAACCATGTTCCCCCATTTTTAGTTCGTAAGGTGTTCACTCAAATTTTTTCTTTCATCAATGTCCAACTATTTAATAGTCTCCTTTTAAGAAGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAGGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCAGCGTGGGATGAGCTGAAGCATATCAGACAGGCGATTGGATTTCTGGTCATACACCAGAAACCTAAGAAAACACTGGATGAAATAAGCCATGACCTGTGCCCGGTCCTCAGCATCCAGCAGTTGTATCGGATTAGCACAATGTACTGGGATGACAAGTATGGAACGCATAGCGTGTCACCTGATGTCATTTCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAACGCTGTTAGTAGTTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCCGTTGATGATCTGTCAAGGTCGATGGAACAAATAGATATTTCCGATGTTGAGGCCCCACCACTTATTCGGGACAACTCTGGCTTTAGTTTCTTGTTGCCAAGCCCAGATTGA 4587 0.4125 MGTPVNIIAGSHVWIEDPDVAWIDGQVSKITGKDAEIETTNGKKVSAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDPHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPHEEIEKYKLDSPRSFHYLNQSNFYELADVSDAREYLATRRAMDVVGISQKDQDAIFRVVAAILHLGNIAFAKGKEVDSSVPKDDKAKFHLKTTAELLMCDADALQDALCKRVMVTPEEVIKRSLDPQSALISRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQSFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCPFVAGLFPPLPEETSKSSKFSSIASRFKLQLQQLMETLNSTEPHYVRCIKPNNVLKPAIFENINIMQQLRCGGVLEAIRISCAGYPTRRLFFEFAHRFGILAPEVVDGNSDEKVVCQKILEKVGLKGYQIGKTKIFLRAGQMAELDAQRAQVLSRAAKIIQRRIRTHQARNHYLALHRTTVFMQSLCRGRLACKDYENMRREAAAKKIQKNVRGYAARKAYKRFHASVLILQTGLRTMGARNQFRFRKQTKAAVIVQAWWRCRKATLYYKRLKKSTIVAQCRWRGRLARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEEAKAQEVAKLQNSLQEMQNKIDETNALLVKEKENAKKVVEEAPPVIKETQILVEDTQKIESLTGEVESLKTSLESEKQKVEDFERKYNESQAFIEEQGKKLEETEKKVGQLQESLTRLEEKITNLESENRVLRQQAVSMTPNKFLSGRSRSIIQRGSESGHIVGEAKVPVDLYSSSINQREHAEVDDKPQKSLNEKQQENQDLLIRCIAQHVGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGNAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPTGVNLSLINGSISGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEXSPLLGLCIQAPRTSRASLVKGSLSLANTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSSSFLLDDDSSIPFSVDDLSRSMEQIDISDVEAPPLIRDNSGFSFLLPSPD 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4560 1529 SMART DIL_2 1347 1454 IPR002710 -
Prci1g4560 1529 PANTHER MYOSIN 54 1460 - -
Prci1g4560 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Prci1g4560 1529 Gene3D - 833 882 - -
Prci1g4560 1529 Gene3D - 734 784 - -
Prci1g4560 1529 Gene3D - 785 832 - -
Prci1g4560 1529 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 FunFam Myosin 2 312 425 - -
Prci1g4560 1529 CDD MYSc_Myo11 76 720 IPR036018 -
Prci1g4560 1529 FunFam Class V myosin 439 577 - -
Prci1g4560 1529 FunFam unconventional myosin-Va 737 785 - -
Prci1g4560 1529 Gene3D Kinesin motor domain 65 662 IPR036961 -
Prci1g4560 1529 FunFam unconventional myosin-Va 786 833 - -
Prci1g4560 1529 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 Gene3D - 252 310 - -
Prci1g4560 1529 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Prci1g4560 1529 CDD MyosinXI_CBD 1111 1495 IPR037975 GO:0007015
Prci1g4560 1529 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Prci1g4560 1529 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Prci1g4560 1529 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Prci1g4560 1529 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Prci1g4560 1529 ProSiteProfiles Dilute domain profile. 1160 1472 IPR002710 -
Prci1g4560 1529 Pfam DIL domain 1348 1451 IPR002710 -
Prci1g4560 1529 Gene3D - 667 733 - -
Prci1g4560 1529 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 Coils Coil 877 957 - -
Prci1g4560 1529 ProSiteProfiles IQ motif profile. 783 810 IPR000048 GO:0005515
Prci1g4560 1529 SMART iq_5 853 875 IPR000048 GO:0005515
Prci1g4560 1529 SMART iq_5 830 852 IPR000048 GO:0005515
Prci1g4560 1529 SMART iq_5 805 827 IPR000048 GO:0005515
Prci1g4560 1529 SMART iq_5 782 804 IPR000048 GO:0005515
Prci1g4560 1529 SMART iq_5 757 779 IPR000048 GO:0005515
Prci1g4560 1529 SMART iq_5 734 756 IPR000048 GO:0005515
Prci1g4560 1529 Coils Coil 975 1002 - -
Prci1g4560 1529 Gene3D - 439 623 - -
Prci1g4560 1529 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 FunFam Myosin heavy chain 252 307 - -
Prci1g4560 1529 Coils Coil 1010 1051 - -
Prci1g4560 1529 FunFam unconventional myosin-Va 834 881 - -
Prci1g4560 1529 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Prci1g4560 1529 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Prci1g4560 1529 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Prci1g4560 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Prci1g4560 1529 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4560 Prci-Chr1 58962201 58974922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4560 1 1529 Myosins gene family AT1G54560 83.007 0.0 2685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4560 K10357 - gmx:100816792 2651.31