Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4541 ATGGCCGCCTCTGCCCAGCCAAAGCCCAAGAAATCTGCCGTCGCGAGGAAACCCAAACCCTCGCCCTCACATCCACCTTTCGCCGAGATGATCGCGGATGCGATCGCAAGTCTCAAGGAGAGGACCGGTTCCAGCCAGTATGCCATCACCAAGTTCATCGAGGAGAAGCACAAGCATTTGCCTCCCACTTTCAGGAAGCTCTTGCTGAACAATTTGAAGAAGTCCGTGGCTGCCGGCAAGCTCGTCAAGGTCAAGAACTCCTTCAAGCTTCCACCTAAAAAGCCGGCTCCTGCTACGGAGAAGCCCCCAAAGCCAACCGTCAAGGCCGCATCTAAGCCCTCTGCTAAACCAAAAGTGGTGGCTAAGCCCAAAGCCGTTCCCAAACCCAAACCTTCATCTGCAAGAAGTGCAAAAGCGACTTCGAGGCCGGTAAAGGTATCGGCCAGGACCTCTCTCGGGAAGAGGGTGGTCAAAGCGGCAAAGAATGTGAAGAAGCCCAAGAGCGTCAAATCGCCGGCCAAAAAAGAGGCTGTCAAGAAGGTCAAGAAGTAG 552 0.5453 MAASAQPKPKKSAVARKPKPSPSHPPFAEMIADAIASLKERTGSSQYAITKFIEEKHKHLPPTFRKLLLNNLKKSVAAGKLVKVKNSFKLPPKKPAPATEKPPKPTVKAASKPSAKPKVVAKPKAVPKPKPSSARSAKATSRPVKVSARTSLGKRVVKAAKNVKKPKSVKSPAKKEAVKKVKK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4541 183 PRINTS Histone H5 signature 112 126 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4541 183 PRINTS Histone H5 signature 171 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4541 183 PRINTS Histone H5 signature 149 166 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4541 183 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4541 183 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4541 183 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4541 183 PANTHER HISTONE H1 6 175 - -
Prci1g4541 183 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4541 183 MobiDBLite consensus disorder prediction 86 183 - -
Prci1g4541 183 MobiDBLite consensus disorder prediction 1 27 - -
Prci1g4541 183 Pfam linker histone H1 and H5 family 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4541 183 CDD H15 27 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4541 183 Gene3D - 18 105 IPR036388 -
Prci1g4541 183 SUPERFAMILY "Winged helix" DNA-binding domain 20 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4541 Prci-Chr1 58895548 58896336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4541 30 95 Single Myb Histone (SMH) Gene Family AT1G49950 42.424 2.31e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4541 K11275 - gmx:100810590 128.642