Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4537 ATGGCGAGTCAGGTGGTCAGAGTGAAGAGGGAGACGCTAGAAGCATGCATGACATGCCCTCTTTGTCGCAAACTTTTGAAGGATGCTACTACCATCTCTCTCTGCCTTCATACGTTCTGCAGGAAATGTATATATGAGAGACTCTCAGATGAGGAGGCAGATTGCTGTCCAGTATGCAATATTGACCTGGGCTGTCTTCCAGTGGAAAAACTGAGGCCAGATAACAATTTGCAAGATATTAGAGCCAAAATATTCCCTTTGAGAGGAAGAAAGATTAAGGCACCAGAGGCAATACCTTCAGTACCTCTGCCAGCCAAAAGGAAGGAAAGATCACTTTCGTCATTGGTGATCTCTGCTCCTAAAGTTTCAATGCAAACTGGCTTCACAGGAAAGAGAACAAAAACTGGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAATTTTTCTGTTCATGAATCCATAAAGAAGGAAGAAGGCTATGCCGAGGATAACCCAGATTCTCCCATAGCTGAGCCTTCTAAGAAGAATAGGCCTAATGAAGATACAGAGAAAAATGTGGAACTTCCAGAAGGAAAAGTTGATCTCTGGACACCCTTGAATTGTCTTGTTGAAGCTGCCAACAGAACAAAATCCTCAAAGTTAACTTCGCAAGGCTTGTCTCTTGCCAAATCAGAGCCTCCAAGTACTCCCAATGGTGGACCAAGCATGCCTGAAATGACAACCAAATCAGAGCCCCCTGCTACTGTCCATAGTGAATTACGTGTGCCTAAAACCAAAAACAAGGATAATGGACATAAAACAAAATTTGGACATGATAAGGATGAAAATGCTGTGCCTCTAGGACAAGTGAGGCGGAGAAGGGTGCGTCCAGCTGGTCAGAAAAGAGCTGCAGCATCTGAGATTTCTGCCTCAGCTCAAGTTATGCTAGATGCAGCTGGGGGCAGGTGTAACAGAGAAAACTGTCCTATTTGGTTTTCATTGGTTGCTTCAGAAGACCAGAAAGGAGATGTTCCCTTGCCTCAAATTTCAGCATGCTACTTAAGAATAAAGGATGGTACTGTGCCCGTCTCCTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGCGAGGCAGAGGTGGAAATAATGTGCCGTGGTCGACCAGTGCTGCCATCTTTGCAACTGCATAACTTAGTTGATCTCTGGTTCAGGACTGCATCATCCTCTAAAAAGATTCCTGCTTCGGTTGGCTCCTCCGCCAAGGACTTCGTTATGGTTTTATCATATTGTCGAAAAGCCCTCCCTCCTTAG 1296 0.446 MASQVVRVKRETLEACMTCPLCRKLLKDATTISLCLHTFCRKCIYERLSDEEADCCPVCNIDLGCLPVEKLRPDNNLQDIRAKIFPLRGRKIKAPEAIPSVPLPAKRKERSLSSLVISAPKVSMQTGFTGKRTKTGTRKAAALRGCNFSVHESIKKEEGYAEDNPDSPIAEPSKKNRPNEDTEKNVELPEGKVDLWTPLNCLVEAANRTKSSKLTSQGLSLAKSEPPSTPNGGPSMPEMTTKSEPPATVHSELRVPKTKNKDNGHKTKFGHDKDENAVPLGQVRRRRVRPAGQKRAAASEISASAQVMLDAAGGRCNRENCPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGRPVLPSLQLHNLVDLWFRTASSSKKIPASVGSSAKDFVMVLSYCRKALPP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4537 431 MobiDBLite consensus disorder prediction 210 247 - -
Prci1g4537 431 MobiDBLite consensus disorder prediction 154 190 - -
Prci1g4537 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Prci1g4537 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Prci1g4537 431 Gene3D - 304 407 - -
Prci1g4537 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 429 IPR044807 GO:0004842
Prci1g4537 431 SMART ring_2 19 59 IPR001841 -
Prci1g4537 431 CDD RING-HC_PCGF 17 60 - -
Prci1g4537 431 MobiDBLite consensus disorder prediction 210 250 - -
Prci1g4537 431 SUPERFAMILY RING/U-box 12 82 - -
Prci1g4537 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Prci1g4537 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4537 Prci-Chr1 58856944 58863460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4537 5 350 C3H Transcription Factor Family AT2G30580 43.716 2.16e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4537 K16277 - gmx:100783999 669.463